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methylationEPIC
•
reset
0
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0
replies
1.1k
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Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.4 years ago
rmf
▴ 20
0
votes
0
replies
877
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.4 years ago
rmf
▴ 20
3
votes
6
replies
2.2k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.4 years ago • updated 6.3 years ago
david.ch
• 0
0
votes
0
replies
1.1k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.4 years ago
gabrielrfries
• 0
0
votes
1
reply
2.0k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.5 years ago by
Yuan Tian
▴ 290 • written 6.5 years ago by
csappleby-mallinder1
• 0
3
votes
4
replies
3.2k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.8 years ago by
rcavalca
▴ 140 • written 6.8 years ago by
karthikrpad
▴ 10
0
votes
0
replies
945
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
7.0 years ago
Ellen O
• 0
0
votes
2
replies
2.0k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.2 years ago by
Guido Hooiveld
★ 4.0k • written 7.2 years ago by
Ellen O
• 0
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.4 years ago
nhejazi
• 0
0
votes
0
replies
1.1k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.4 years ago
chelsey.ju
• 0
0
votes
3
replies
1.7k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.6 years ago • updated 7.5 years ago
annabelle.congras
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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