Showing : methylationEPIC • reset
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.2 years ago rmf ▴ 20
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.2 years ago rmf ▴ 20
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could not find function "champ.load"
ChAMP champ 2.9.10 methylationepic
6.1 years ago david.ch • 0
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differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
6.2 years ago gabrielrfries • 0
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ChAMP Methylation analysis error code "could not find function champ.load"
champ methylationepic
updated 6.3 years ago by ▴ 280 • written 6.3 years ago by • 0
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Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 6.6 years ago by ▴ 140 • written 6.6 years ago by ▴ 10
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Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
6.8 years ago Ellen O • 0
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Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 7.0 years ago by ★ 3.9k • written 7.0 years ago by • 0
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minfi "mapToGenome" dimension error
methylation epic microarray minfi methylationepic
7.2 years ago nhejazi • 0
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Shinymethyl 850K Array quality control signal cutoffs
shinymethyl minfi epic microarray methylationepic qualitycontrol
7.2 years ago chelsey.ju • 0
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MINFI missing samples in qcreports and densityplots
minfi illumina methylationEPIC densityplot
7.3 years ago annabelle.congras ▴ 10
11 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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