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methylationEPIC
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0
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0
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1.3k
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Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.7 years ago
firestar
▴ 20
0
votes
0
replies
944
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.7 years ago
firestar
▴ 20
3
votes
6
replies
2.4k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.7 years ago
david.ch
• 0
0
votes
0
replies
1.2k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.8 years ago
gabrielrfries
• 0
0
votes
1
reply
2.2k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.9 years ago by
Yuan Tian
▴ 290 • written 6.9 years ago by
csappleby-mallinder1
• 0
3
votes
4
replies
3.4k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 7.2 years ago by
rcavalca
▴ 140 • written 7.2 years ago by
karthikrpad
▴ 10
0
votes
0
replies
1.0k
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
7.4 years ago
Ellen O
• 0
0
votes
2
replies
2.2k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.6 years ago by
Guido Hooiveld
★ 4.1k • written 7.6 years ago by
Ellen O
• 0
0
votes
4
replies
1.9k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.8 years ago
nhejazi
• 0
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.8 years ago
chelsey.ju
• 0
0
votes
3
replies
1.9k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.9 years ago
annabelle.congras
▴ 10
11 results • Page
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Recent ...
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Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
• 0
I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
Awards
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Teacher
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Michael Love
43k
Popular Question
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Dario Strbenac
★ 1.5k
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to
ATpoint
★ 4.6k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bhandary.8590
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