Bioconductor Dependency

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package installation shortread dependency

updated 4.5 years ago by January Weiner ▴ 240 • written 5.6 years ago by joseph.elsherbini ▴ 60

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flowCore Installation dependency

updated 4.5 years ago by Jake Wagner ▴ 310 • written 4.5 years ago by Robert Baer ▴ 70

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bioconductor R go.db annotationdbi dependency

6.8 years ago Sidi.Ma • 0

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dependency github

7.9 years ago kmezhoud ▴ 10

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installation dependency library hdf5

8.2 years ago Ulrik Stervbo ▴ 30

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

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Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

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Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k