Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
derfinder
•
reset
3
votes
2
replies
1.2k
views
DESeq2 normalization when using with derfinder
Normalization
DESeq2
derfinder
3.1 years ago
Debayan
▴ 20
4
votes
4
replies
1.4k
views
derfinder model.matrix with limma or single base-level F-statistics analysis
derfinder
3.4 years ago • updated 3.3 years ago
Konstantinos Yeles
▴ 80
3
votes
5
replies
1.5k
views
Detection of large regions of expression
derfinder
intergenic expression
updated 5.2 years ago by
Leonardo Collado Torres
★ 1.1k • written 5.2 years ago by
António Miguel de Jesus Domingues
▴ 510
3
votes
3
replies
2.0k
views
derfinder: how to merge regions and counts from individual chromosomes
derfinder
recount
updated 7.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.0 years ago by
António Miguel de Jesus Domingues
▴ 510
2
votes
1
reply
1.6k
views
derfinder mean Expressed Region cutoff
derfinder
updated 7.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.0 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
3
replies
1.5k
views
How to preserve the strand of coverage in derfinder::regionMatrix() ?
derfinder
updated 7.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.3 years ago by
fruce_ki
▴ 20
3
votes
13
replies
2.8k
views
IRanges error from derfinder analyzeChr with custom TxDb?
derfinder
genomicfeatures
genomicranges
updated 7.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.3 years ago by
fruce_ki
▴ 20
2
votes
1
reply
1.4k
views
Read normalization in derfinder
derfinder
normalization
rnaseq
updated 7.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.3 years ago by
helene.gylling
▴ 10
2
votes
1
reply
1.2k
views
Derinder options (species, annotations style)
derfinder
rnaseq
differential expression
updated 7.4 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.4 years ago by
fruce_ki
▴ 20
0
votes
1
reply
1.5k
views
derfinder fullCoverage() changes chromosome style and then regionMatrix() complains and ignores provided 'currentStyle'
derfinder
7.6 years ago
Wayne
• 0
0
votes
7
replies
2.4k
views
regionMatrix for derfinder crashes with seqnames issue on non-human data
derfinder
GenomeInfoDb
GenomicRanges
7.6 years ago
Wayne
• 0
0
votes
1
reply
1.9k
views
error with base-level DERfinder using large sample sizes
derfinder
updated 7.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.7 years ago by
andrewelamb
• 0
1
vote
10
replies
3.8k
views
Issue creating a genomic state object in derfinder from an Ensembl GTF file
derfinder
genomicfeatures
7.8 years ago
Leonardo Collado Torres
★ 1.1k
1
vote
2
replies
1.5k
views
derfinder on bacteria PE strand specific RNA-seq
derfinder
8.0 years ago
eva.pinatel
▴ 10
2
votes
6
replies
2.4k
views
derfinder gets stuck in calculatePvalues
derfinder
software error
rnaseq
9.5 years ago • updated 9.4 years ago
drramki.chop
• 0
0
votes
1
reply
1.6k
views
derfinder fails on findRegions step
derfinder
updated 9.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 9.5 years ago by
pschaugh
• 0
9
votes
20
replies
3.1k
views
derfinder: analyzeChr() freezes in f-stat calculation
derfinder
updated 9.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 9.7 years ago by
jessica.hekman
▴ 40
0
votes
1
reply
1.8k
views
Error message suggestion for fullCoverage in derfinder
derfinder
updated 9.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 9.9 years ago by
jessica.hekman
▴ 40
1
vote
10
replies
2.6k
views
derfinder failing in mergeResults()
derfinder
updated 9.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 10.0 years ago by
jessica.hekman
▴ 40
8
votes
31
replies
5.0k
views
derfinder: analyzeChr() breaks on chromosomes > 22
derfinder
10.1 years ago
jessica.hekman
▴ 40
2
votes
3
replies
1.5k
views
derfinder: mergeResults() running for three days and still going...
derfinder
10.1 years ago
jessica.hekman
▴ 40
5
votes
20
replies
3.6k
views
derfinder: fullCoverage() problems
derfinder
updated 10.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 10.1 years ago by
jessica.hekman
▴ 40
0
votes
6
replies
2.1k
views
derfinder and BAM indexes
derfinder
10.1 years ago
jessica.hekman
▴ 40
23 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
• 0
I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
Awards
• All
Teacher
to
Michael Love
43k
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
ATpoint
★ 4.6k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bhandary.8590
▴ 20
Locations
• All
United States,
just now
France,
6 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
India,
1 hour ago
UPF, Barcelona, Spain,
1 hour ago
Traffic: 463 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6