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designmatrix
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0
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2
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693
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Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
limma
DifferentialExpression
Designmatrix
11 months ago • updated 10 months ago
Tadeoye
▴ 20
0
votes
1
reply
551
views
Deseq2 design matrix
DESeq2
Designmatrix
limma
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Neha
• 0
0
votes
3
replies
965
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 18 months ago by
Gordon Smyth
53k • written 18 months ago by
prity6459
• 0
0
votes
1
reply
578
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 19 months ago by
Gordon Smyth
53k • written 19 months ago by
avery
• 0
3
votes
5
replies
1.7k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 2.8 years ago by
Michael Love
43k • written 2.8 years ago by
aditya.m
▴ 10
4
votes
6
replies
1.8k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
2.9 years ago
Abdul
▴ 20
2
votes
4
replies
2.0k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 4.0 years ago by
Gordon Smyth
53k • written 4.1 years ago by
rebecca.lea.johnston
• 0
0
votes
3
replies
1.6k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 4.0 years ago by
swbarnes2
★ 1.4k • written 4.0 years ago by
OST
• 0
1
vote
2
replies
1.6k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 4.6 years ago by
Gordon Smyth
53k • written 4.6 years ago by
athief
▴ 20
1
vote
0
replies
976
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
4.7 years ago
nageshprabhu.k
▴ 10
2
votes
4
replies
1.5k
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
4.7 years ago
Debayan
▴ 20
0
votes
2
replies
1.5k
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
4.7 years ago
sfidemw
• 0
0
votes
2
replies
1.2k
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
anshulmbi
• 0
0
votes
2
replies
1.3k
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 6.5 years ago by
Aaron Lun
★ 29k • written 6.5 years ago by
Beginner
▴ 60
2
votes
6
replies
1.7k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 7.3 years ago by
Aaron Lun
★ 29k • written 7.3 years ago by
Keifa
▴ 10
2
votes
4
replies
1.8k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 9.3 years ago by
Aaron Lun
★ 29k • written 9.3 years ago by
nashchem
• 0
16 results • Page
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Recent ...
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Answer: Integration: Paired-end vs healthy single-end from a different source
by
wba64023
• 0
Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…
Comment: Could we detect difference at pathway level but not significant different at gen
by
wba64023
• 0
thanks for sharing! [slope 2][1] [1]: https://slope2.online
Comment: After running samtools, the featureCounts command crashed.
by
eja.gssssse.r.m
• 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type
by
eja.gssssse.r.m
• 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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