Bioconductor Designmatrix

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limma DifferentialExpression Designmatrix

11 months ago Tadeoye ▴ 20

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564

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DESeq2 Designmatrix limma

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by Neha • 0

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subsettingdata edgeR designmatrix

updated 19 months ago by Gordon Smyth 53k • written 19 months ago by prity6459 • 0

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limma designmatrix

updated 20 months ago by Gordon Smyth 53k • written 20 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

3.0 years ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 4.1 years ago by Gordon Smyth 53k • written 4.1 years ago by rebecca.lea.johnston • 0

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designmatrix deseq2 DESeq2

updated 4.1 years ago by swbarnes2 ★ 1.4k • written 4.1 years ago by OST • 0

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designmatrix RNA-seq limma

updated 4.7 years ago by Gordon Smyth 53k • written 4.7 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

4.8 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

4.8 years ago Debayan ▴ 20

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edgeR pairedsamples designmatrix

4.8 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by anshulmbi • 0

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edger r differentialanalysis rnaseq designmatrix

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Beginner ▴ 60

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Limma designMatrix

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by Keifa ▴ 10

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limma microarray designmatrix

updated 9.3 years ago by Aaron Lun ★ 29k • written 9.3 years ago by nashchem • 0

16 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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