Bioconductor Designmatrix

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693

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limma DifferentialExpression Designmatrix

11 months ago • updated 10 months ago Tadeoye ▴ 20

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551

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DESeq2 Designmatrix limma

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by Neha • 0

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965

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subsettingdata edgeR designmatrix

updated 18 months ago by Gordon Smyth 53k • written 18 months ago by prity6459 • 0

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578

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limma designmatrix

updated 19 months ago by Gordon Smyth 53k • written 19 months ago by avery • 0

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1.7k

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by aditya.m ▴ 10

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1.8k

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R designmatrix edgeR limma model.matrix

2.9 years ago Abdul ▴ 20

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2.0k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 4.0 years ago by Gordon Smyth 53k • written 4.1 years ago by rebecca.lea.johnston • 0

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1.6k

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designmatrix deseq2 DESeq2

updated 4.0 years ago by swbarnes2 ★ 1.4k • written 4.0 years ago by OST • 0

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1.6k

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designmatrix RNA-seq limma

updated 4.6 years ago by Gordon Smyth 53k • written 4.6 years ago by athief ▴ 20

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976

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designmatrix DifferentialExpression edgeR RNAseq

4.7 years ago nageshprabhu.k ▴ 10

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1.5k

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MutlipleFactors DesignMatrix edgeR

4.7 years ago Debayan ▴ 20

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1.5k

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edgeR pairedsamples designmatrix

4.7 years ago sfidemw • 0

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1.2k

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deseq2 miRNASeq designmatrix Batch

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by anshulmbi • 0

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1.3k

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edger r differentialanalysis rnaseq designmatrix

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by Beginner ▴ 60

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1.7k

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Limma designMatrix

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by Keifa ▴ 10

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1.8k

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limma microarray designmatrix

updated 9.3 years ago by Aaron Lun ★ 29k • written 9.3 years ago by nashchem • 0

16 results • Page 1 of 1

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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40