Bioconductor Designmatrix

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401

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limma DifferentialExpression Designmatrix

3 months ago Tadeoye ▴ 20

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419

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DESeq2 Designmatrix limma

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by Neha • 0

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723

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subsettingdata edgeR designmatrix

updated 11 months ago by Gordon Smyth 52k • written 11 months ago by prity6459 • 0

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441

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limma designmatrix

updated 11 months ago by Gordon Smyth 52k • written 11 months ago by avery • 0

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1.4k

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by aditya.m ▴ 10

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1.6k

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R designmatrix edgeR limma model.matrix

2.3 years ago Abdul ▴ 20

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1.8k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.4 years ago by Gordon Smyth 52k • written 3.5 years ago by rebecca.lea.johnston • 0

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1.5k

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designmatrix deseq2 DESeq2

updated 3.4 years ago by swbarnes2 ★ 1.4k • written 3.4 years ago by OST • 0

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1.4k

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designmatrix RNA-seq limma

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by athief ▴ 20

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876

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designmatrix DifferentialExpression edgeR RNAseq

4.1 years ago nageshprabhu.k ▴ 10

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1.3k

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MutlipleFactors DesignMatrix edgeR

4.1 years ago Debayan ▴ 20

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1.3k

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edgeR pairedsamples designmatrix

4.1 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by anshulmbi • 0

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edger r differentialanalysis rnaseq designmatrix

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Beginner ▴ 60

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Limma designMatrix

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by Keifa ▴ 10

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1.6k

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limma microarray designmatrix

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by nashchem • 0

16 results • Page 1 of 1

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

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Answer: Merging annotation with differential expression output

Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

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