Bioconductor Designmatrix

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limma DifferentialExpression Designmatrix

8 months ago Tadeoye ▴ 20

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DESeq2 Designmatrix limma

updated 14 months ago by James W. MacDonald 68k • written 14 months ago by Neha • 0

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882

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subsettingdata edgeR designmatrix

updated 16 months ago by Gordon Smyth 52k • written 16 months ago by prity6459 • 0

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limma designmatrix

updated 17 months ago by Gordon Smyth 52k • written 17 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.6 years ago by Michael Love 43k • written 2.6 years ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

2.7 years ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.8 years ago by Gordon Smyth 52k • written 3.9 years ago by rebecca.lea.johnston • 0

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designmatrix deseq2 DESeq2

updated 3.9 years ago by swbarnes2 ★ 1.4k • written 3.9 years ago by OST • 0

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designmatrix RNA-seq limma

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

4.5 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

4.6 years ago Debayan ▴ 20

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edgeR pairedsamples designmatrix

4.6 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by anshulmbi • 0

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edger r differentialanalysis rnaseq designmatrix

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by Beginner ▴ 60

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Limma designMatrix

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by Keifa ▴ 10

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limma microarray designmatrix

updated 9.1 years ago by Aaron Lun ★ 29k • written 9.1 years ago by nashchem • 0

16 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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