Bioconductor DiffSplice

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diffSplice limma

4.1 years ago jamie.gearing ▴ 60

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1.1k

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limma diffSplice

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by gerberst • 0

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1.8k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by relathman ▴ 20

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1.5k

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limma diffSplice

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by willj ▴ 30

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4.1k

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edgeR limma diffSplice DEXSeq

updated 9.1 years ago by Charity Law ▴ 90 • written 9.1 years ago by maltethodberg ▴ 180

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1.4k

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limma diffSplice plotSplice exons annotation

10.0 years ago Jose M Garcia Manteiga ▴ 310

6 results • Page 1 of 1

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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Your approach 1 is a bad idea. Subtracting the gene counts won't do what you want to do. I would personally check to see if there is any…

Comment: Can NanoString data be analyzed using DESeq2? by James W. MacDonald 68k

You can always discard, although you can also retain them to check for unexpected differences.

Comment: DESeq2 on NanoString Data by Michael Love 43k

Yes, if I discern a batch from EDA including looking at PCs, sample correlations, etc. It is close to SVA, we discuss both in the workflow…

Comment: DESeq2 on NanoString Data by thkapell ▴ 10

Thanks Michael. To this end, do you routinely use RUV or only when you detect a batch? It looks like it works in a similar fashion to SVA w…

Comment: Can NanoString data be analyzed using DESeq2? by thkapell ▴ 10

Thank you. I agree with your thoughts about the similarities of NanoString with RNA-seq. NanoString though, also has positive, negative pro…

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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Comment: Are voomByGroup and voomLmFit compatible?

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