Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
diffbind
•
reset
1
vote
10
replies
6.0k
views
DiffBind - question on the use of filtered or unfiltered input data
DiffBind
updated 17 days ago by
nlp97204
• 0 • written 2.3 years ago by
Oscar
▴ 10
0
votes
0
replies
145
views
DiffBind plot.profile error
BiocParallel
DiffBind
10 weeks ago
this_is_me_trying
• 0
0
votes
0
replies
870
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq
profileplyr
DiffBind
3 months ago
Muhammad
• 0
0
votes
0
replies
279
views
I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap
mergingpeaks
ChIPseq
DiffBind
4 months ago
atlanta
• 0
0
votes
4
replies
2.2k
views
DiffBind can't find a DAR
dar
ATACSeq
DiffBind
4 months ago
Mengjun
• 0
0
votes
0
replies
167
views
DiffBind multi-tissue comparison
DiffBind
5 months ago
lryrainche
• 0
1
vote
8
replies
2.5k
views
[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw
ChIPseq
DESeq2
DiffBind
5 months ago • updated 4 months ago
Luca
• 0
0
votes
0
replies
270
views
DiffBind recommendation on using IgG bams
peakcalling
DiffBind
5 months ago
Harish
• 0
0
votes
4
replies
1.3k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR
DiffBind
updated 5 months ago by
Harry
• 0 • written 5 months ago by
tifaGis
• 0
0
votes
1
reply
259
views
building samplesheet and plot profile
DiffBind
6 months ago
yf
• 0
0
votes
5
replies
648
views
Diffbind interpretation of data - fold change
DiffBind
7 months ago
Vera
• 0
0
votes
0
replies
494
views
Diffbind: Cut&Run: E-coli spike-in
Normalization
DiffBind
9 months ago
kim
• 0
0
votes
0
replies
322
views
diffbind covariates
DiffBind
ATACSeq
updated 9 months ago by
Michael Love
43k • written 9 months ago by
Alpesh Querer
▴ 220
0
votes
2
replies
862
views
DiffBind dba.report discrepancy
DiffBind
10 months ago • updated 9 months ago
aelbassiouny
• 0
0
votes
0
replies
265
views
DiffBind subset replicates
DiffBind
10 months ago
Haiping
• 0
0
votes
0
replies
488
views
Background normalization of Diffbind dba.normalize
Normalization
DiffBind
10 months ago
Young Boqin
• 0
0
votes
0
replies
422
views
Trying to understand basic DiffBind usage
ChIPSeq
DiffBind
11 months ago
Alejandro
• 0
0
votes
2
replies
555
views
DiffBind for MBD-seq
MBD-seq
DiffBind
11 months ago
Marianna
▴ 20
0
votes
1
reply
649
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
12 months ago • updated 6 months ago
Ian D.
▴ 70
0
votes
1
reply
505
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
12 months ago
mdidish
▴ 10
0
votes
0
replies
424
views
DiffBind dba.plotprofile y-axis range
DiffBind
12 months ago
Tara
• 0
0
votes
8
replies
1.2k
views
DiffBind full library size not reliable
DiffBind
Reads
MACS2
FullLibSize
updated 12 months ago by
Rory Stark
★ 5.2k • written 12 months ago by
Marianna
▴ 20
1
vote
3
replies
823
views
Create merged ChIP heatmap across conditions
DiffBind
profileplyr
updated 13 months ago by
Rory Stark
★ 5.2k • written 13 months ago by
jesswhitts
• 0
0
votes
0
replies
629
views
Blacklist regions on DBA object (diffbind)
DiffBind
chipseq
13 months ago
gamma.jian
▴ 10
0
votes
2
replies
839
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind
DifferentialPeakCalling
14 months ago
Mallory
• 0
0
votes
0
replies
450
views
Difference in Contrast in DiffBind
DiffBind
15 months ago
user_bioinfo
• 0
0
votes
0
replies
457
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
15 months ago
Dinesh
• 0
0
votes
1
reply
912
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 9 months ago by
B.N
• 0 • written 15 months ago by
Henry
▴ 10
0
votes
0
replies
638
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
15 months ago
yvonneh
• 0
0
votes
0
replies
423
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
15 months ago
Ian D.
▴ 70
0
votes
9
replies
1.7k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
15 months ago • updated 10 months ago
Ian D.
▴ 70
3
votes
1
reply
806
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 15 months ago by
Michael Love
43k • written 15 months ago by
marcusn
▴ 10
0
votes
1
reply
1.2k
views
ATACseq merge peaks
DiffBind
updated 15 months ago by
ATpoint
★ 4.9k • written 16 months ago by
Shloka
• 0
0
votes
4
replies
851
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
16 months ago
lonn
• 0
0
votes
0
replies
469
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
16 months ago
Virangika
• 0
2
votes
2
replies
952
views
[DiffBind] Obtaining normalization factors
DiffBind
16 months ago
Henry
▴ 10
2
votes
2
replies
1.6k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
16 months ago
Henry
▴ 10
0
votes
0
replies
543
views
How to extract the coordinate of dba.plotPCA?
DiffBind
PCA
16 months ago
feather-W
• 0
0
votes
0
replies
584
views
PCA plot for normalized counts using Diffbind
DiffBind
PCAplot
16 months ago
Ankit
▴ 20
0
votes
0
replies
546
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind
ATACSeq
16 months ago
Pierre Lindenbaum
▴ 10
0
votes
0
replies
534
views
Multifactor analysis in DiffBind
DiffBind
multifactoranalysis
17 months ago
erbrocato
• 0
0
votes
2
replies
828
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
17 months ago
Sam
▴ 10
0
votes
1
reply
663
views
Exact same results in Diffbind with different normalization methods
DiffBind
17 months ago
red_bricks
▴ 60
0
votes
1
reply
895
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind
ATACSeq
19 months ago
isaromero8888
• 0
0
votes
0
replies
885
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind
edgeR
ATACSeq
DESeq2
19 months ago
Jawahar
• 0
0
votes
0
replies
529
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl
ChIPSeq
DiffBind
19 months ago
frueher
• 0
0
votes
0
replies
500
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
19 months ago
Aswathy
• 0
0
votes
0
replies
725
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind
CUT&Tag
19 months ago
Hai
• 0
0
votes
0
replies
615
views
ATACseq- Counts around TSS plot
DiffBind
ATACSeq
19 months ago
inna.gur
• 0
2
votes
2
replies
1.9k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 3 months ago by
etiennedanis
• 0 • written 24 months ago by
Mark
▴ 10
678 results • Page
1 of 14
Recent ...
Replies
Comment: EuroBioC2024 abstract submission is open!
by
rajilrfaze
• 0
[Sportzfy smooth streaming APK][1] ensures zero buffering during your favorite games. [1]: https://sportzfytvapk.com.co/
Comment: p-adjusted values in multiple comparisons
by
ocanorocabayera
• 0
Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…
Comment: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
Not sure what "points" you are referring to, or what you mean by them being "weighted".
Answer: p-adjusted values in multiple comparisons
by
Gordon Smyth
52k
If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…
Answer: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
voomByGroup isn't part of Bioconductor, so questions about it should be send to the voomByGroup issues page. I haven't brought voomByGroup…
Votes
Answer: p-adjusted values in multiple comparisons
Comment: Very different log2 Fold changes with DESeq2 and explict calculation
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: Very different log2 Fold changes with DESeq2 and explict calculation
Awards
• All
Popular Question
to
Pablo marin-garcia
▴ 90
Popular Question
to
mb2subi
• 0
Popular Question
to
altuda
▴ 10
Popular Question
to
Matthew Thornton
▴ 380
Popular Question
to
Dario Strbenac
★ 1.6k
Locations
• All
United States,
27 minutes ago
Barcelona, Spain,
1 hour ago
United States,
3 hours ago
Spain,
4 hours ago
Bangladesh,
5 hours ago
Traffic: 392 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6