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ebseq
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243
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
7 months ago
Javier
• 0
0
votes
1
reply
905
views
EBTest error please add gene/isoform names to the data matrix
EBSeq
5.5 years ago
lli2
• 0
0
votes
3
replies
1.4k
views
Heatmap for ebseq2 output
ebseq
6.5 years ago
drkousi31
• 0
5
votes
1
reply
1.4k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 7.4 years ago by
Aaron Lun
★ 29k • written 7.4 years ago by
marhabaie
• 0
0
votes
0
replies
1.2k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
9.4 years ago
jean.keller
▴ 10
0
votes
0
replies
1.3k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
9.5 years ago
jean.keller
▴ 10
1
vote
1
reply
1.5k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
10.1 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.2k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
10.4 years ago
jbarker2
• 0
0
votes
0
replies
1.7k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
10.4 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.7k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
10.6 years ago
jbarker2
• 0
0
votes
2
replies
3.3k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 11.5 years ago by
James W. MacDonald
68k • written 11.5 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.6 years ago by
Koji Kadota
▴ 10 • written 11.6 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.2k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.6 years ago by
Jianqiang SUN
▴ 10 • written 11.6 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.3k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
11.8 years ago
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
Recent ...
Replies
Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
by
Kevin Blighe
★ 4.0k
Hello Lei, The concept of pseudobulk analysis applies equally to cell surface protein data as it does to gene expression data in single-…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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Guido Hooiveld
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53k
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