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ebseq
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0
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265
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
8 months ago
Javier
• 0
0
votes
1
reply
919
views
EBTest error please add gene/isoform names to the data matrix
EBSeq
5.6 years ago
lli2
• 0
0
votes
3
replies
1.4k
views
Heatmap for ebseq2 output
ebseq
6.6 years ago
drkousi31
• 0
5
votes
1
reply
1.4k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
marhabaie
• 0
0
votes
0
replies
1.2k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
9.5 years ago
jean.keller
▴ 10
0
votes
0
replies
1.3k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
9.6 years ago
jean.keller
▴ 10
1
vote
1
reply
1.6k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
10.2 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.2k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
10.4 years ago
jbarker2
• 0
0
votes
0
replies
1.7k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
10.5 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.7k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
10.7 years ago
jbarker2
• 0
0
votes
2
replies
3.3k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.7 years ago by
Koji Kadota
▴ 10 • written 11.7 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.3k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.7 years ago by
Jianqiang SUN
▴ 10 • written 11.7 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.3k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
11.9 years ago
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
Recent ...
Replies
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Gordon Smyth
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Vincent J. Carey, Jr.
6.7k
Popular Question
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Istvan Albert
▴ 50
Popular Question
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Dario Strbenac
★ 1.6k
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Nikos Ignatiadis
▴ 180
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