Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ebseq
•
reset
0
votes
0
replies
208
views
Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
4 months ago
Javier
• 0
0
votes
1
reply
864
views
EBTest error please add gene/isoform names to the data matrix
EBSeq
5.2 years ago
lli2
• 0
0
votes
3
replies
1.4k
views
Heatmap for ebseq2 output
ebseq
6.3 years ago
drkousi31
• 0
5
votes
1
reply
1.4k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
marhabaie
• 0
0
votes
0
replies
1.2k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
9.1 years ago
jean.keller
▴ 10
0
votes
0
replies
1.2k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
9.2 years ago
jean.keller
▴ 10
1
vote
1
reply
1.5k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
9.8 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.1k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
10.1 years ago
jbarker2
• 0
0
votes
0
replies
1.7k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
10.1 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.6k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
10.3 years ago
jbarker2
• 0
0
votes
2
replies
3.2k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 11.3 years ago by
James W. MacDonald
68k • written 11.3 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
1.9k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.3 years ago by
Koji Kadota
▴ 10 • written 11.3 years ago by
Gordon Smyth
52k
0
votes
1
reply
2.2k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.4 years ago by
Jianqiang SUN
▴ 10 • written 11.4 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.3k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
11.6 years ago
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
Recent ...
Replies
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★ 4.9k
No, cells from the same donor are correlated due to the donor effect. There is literature on this you should read to get started. https:/…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
Raya
• 0
Wouldn't each sample in the single cell rna seq act as a biological replicate? each condition (eg: mab3_20C) has ~70 single cell samples.
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
James W. MacDonald
68k
>Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! They are not the…
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
Denise
• 0
Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! And I suppose ther…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★ 4.9k
There is no biological replication here. This is not supported by DESeq2 (or mos credible statistical tools). You would need different dono…
Votes
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Answer: Are voomByGroup and voomLmFit compatible?
Answer: p-adjusted values in multiple comparisons
Awards
• All
Popular Question
to
Luca
• 0
Popular Question
to
shepherl
4.2k
Popular Question
to
Pablo marin-garcia
▴ 90
Popular Question
to
mb2subi
• 0
Popular Question
to
altuda
▴ 10
Locations
• All
The city by the bay,
just now
United States,
24 minutes ago
United States,
32 minutes ago
United States,
34 minutes ago
United States,
1 hour ago
Traffic: 294 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6