Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ebseq
•
reset
0
votes
1
reply
801
views
EBTest error please add gene/isoform names to the data matrix
EBSeq
4.8 years ago
lli2
• 0
0
votes
3
replies
1.2k
views
Heatmap for ebseq2 output
ebseq
5.9 years ago
drkousi31
• 0
5
votes
1
reply
1.2k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
marhabaie
• 0
0
votes
0
replies
1.1k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
8.7 years ago
jean.keller
▴ 10
0
votes
0
replies
1.2k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
8.8 years ago
jean.keller
▴ 10
1
vote
1
reply
1.4k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
9.4 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.1k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
9.7 years ago
jbarker2
• 0
0
votes
0
replies
1.6k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
9.7 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.5k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
9.9 years ago
jbarker2
• 0
0
votes
2
replies
3.1k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
1.9k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.9 years ago by
Koji Kadota
▴ 10 • written 10.9 years ago by
Gordon Smyth
52k
0
votes
1
reply
2.1k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.9 years ago by
Jianqiang SUN
▴ 10 • written 11.0 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.2k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
11.2 years ago
Dario Strbenac
★ 1.6k
13 results • Page
1 of 1
Recent ...
Replies
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
by
Gordon Smyth
52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas
by
James W. MacDonald
68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Benjamin
▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot
by
Guido Hooiveld
★ 4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Mike Smith
★ 6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
Votes
Answer: Explannation for ROAST results
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
mdeea123
▴ 10
Popular Question
to
GA
▴ 10
Popular Question
to
Elizabeth
• 0
Popular Question
to
Kent
• 0
Locations
• All
United States,
3 minutes ago
WEHI, Melbourne, Australia,
31 minutes ago
United States,
33 minutes ago
United States,
34 minutes ago
The city by the bay,
1 hour ago
Traffic: 611 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6