Showing : ebseq • reset
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
8 months ago Javier • 0
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914
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EBTest error please add gene/isoform names to the data matrix
EBSeq
5.6 years ago lli2 • 0
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3
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1.4k
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Heatmap for ebseq2 output
ebseq
6.6 years ago drkousi31 • 0
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1.4k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 7.4 years ago by ★ 29k • written 7.4 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
9.4 years ago jean.keller ▴ 10
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1.3k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
9.6 years ago jean.keller ▴ 10
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1.6k
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
10.1 years ago vieuphoria ▴ 10
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1.2k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
10.4 years ago jbarker2 • 0
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1.7k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
10.4 years ago jackipchiho ▴ 10
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2
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1.7k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
10.7 years ago jbarker2 • 0
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2
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3.3k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by 53k
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2.2k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.9 years ago Dario Strbenac ★ 1.6k
14 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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