Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.5 years ago lli2 • 0
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3
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Heatmap for ebseq2 output
ebseq
5.5 years ago drkousi31 • 0
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.4 years ago jean.keller ▴ 10
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.5 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.1 years ago vieuphoria ▴ 10
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.4 years ago jbarker2 • 0
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1.5k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.4 years ago jackipchiho ▴ 10
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.6 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.5 years ago by 67k • written 10.5 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by 51k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.8 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Votes
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
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