Showing : ebseq • reset
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
6 months ago Javier • 0
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891
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EBTest error please add gene/isoform names to the data matrix
EBSeq
5.4 years ago lli2 • 0
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1.4k
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Heatmap for ebseq2 output
ebseq
6.4 years ago drkousi31 • 0
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1.4k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 7.3 years ago by ★ 29k • written 7.3 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
9.3 years ago jean.keller ▴ 10
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1.3k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
9.4 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
10.0 years ago vieuphoria ▴ 10
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1.2k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
10.3 years ago jbarker2 • 0
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1.7k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
10.3 years ago jackipchiho ▴ 10
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2
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1.7k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
10.5 years ago jbarker2 • 0
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2
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3.3k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 10
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2.0k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.5 years ago by ▴ 10 • written 11.5 years ago by 53k
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2.2k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.5 years ago by ▴ 10 • written 11.5 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.8 years ago Dario Strbenac ★ 1.6k
14 results • Page 1 of 1
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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0
Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …
Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0
When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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