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edgeR
•
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9
votes
12
replies
7.8k
views
Multi factor design edgeR/Deseq2
deseq2
edgeR
rna-seq
updated 20 days ago by
Elizabeth
• 0 • written 8.8 years ago by
gthm
▴ 30
6
votes
10
replies
1.7k
views
Which input file is used for DGEList in EgdeR?
salmon
edgeR
tximport
nf-core
gene_counts
updated 19 days ago by
i.atanasoai
• 0 • written 15 months ago by
mohammedtoufiq91
▴ 10
5
votes
6
replies
434
views
Not fully paired differential gene expression analysis
edgeR
DifferentialExpression
updated 25 days ago by
ATpoint
★ 4.1k • written 29 days ago by
nhaus
▴ 30
4
votes
6
replies
441
views
FilterByExpr low counts with small sample size
edgeR
21 days ago • updated 16 days ago
Jonathan
▴ 10
1
vote
3
replies
353
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 23 days ago by
Gordon Smyth
50k • written 28 days ago by
Simran
• 0
0
votes
3
replies
193
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 19 days ago by
Gordon Smyth
50k • written 20 days ago by
prity6459
• 0
3
votes
3
replies
347
views
permutation test in edgeR
rna-seq
edgeR
updated 17 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Netanel
• 0
4
votes
2
replies
551
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
6 days ago • updated 2 days ago
gene_bioconductor
▴ 10
0
votes
2
replies
138
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
19 days ago
prity6459
• 0
1
vote
1
reply
181
views
Citation for edgeR user guide
edgeR
updated 15 days ago by
Gordon Smyth
50k • written 15 days ago by
k___
▴ 30
3
votes
1
reply
180
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 19 days ago by
Gordon Smyth
50k • written 20 days ago by
Shaimaa Gamal
• 0
0
votes
1
reply
133
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 6 days ago by
Gordon Smyth
50k • written 6 days ago by
z_bahari
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Awards
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Teacher
to
Michael Love
42k
Popular Question
to
Haibo Liu
• 0
Popular Question
to
HS
▴ 10
Popular Question
to
DevelopingHippo
• 0
Scholar
to
Robert Castelo
★ 3.3k
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