Showing : mart • reset
0
votes
0
replies
159
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
6 weeks ago Ensembl_Jorge • 0
0
votes
1
reply
1.5k
views
Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart martconfigurator biomaRt xml
updated 4.0 years ago by ★ 6.6k • written 4.0 years ago by • 0
1
vote
0
replies
936
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
4.6 years ago Thomas Maurel ▴ 800
0
votes
2
replies
2.4k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
0
votes
0
replies
916
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
4.9 years ago Thomas Maurel ▴ 800
0
votes
0
replies
1.1k
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
5.2 years ago Thomas Maurel ▴ 800
0
votes
4
replies
1.3k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart mart getbm
updated 6.3 years ago by 67k • written 6.3 years ago by ▴ 20
1
vote
0
replies
1.3k
views
News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
8.4 years ago Thomas Maurel ▴ 800
4
votes
9
replies
3.3k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 8.6 years ago by ▴ 20 • written 8.7 years ago by ▴ 800
9 results • Page 1 of 1
Recent ...
Replies
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
Hi, what's the output from `dim(spe)`?
Answer: DESeq2- merging technical vs biological replicates by Michael Love 43k
Technical replicates (more sequencing of same library) you can use `collapseReplicates()`. But biological replicates are best handled wi…
Answer: lfcShrink and alpha value by Michael Love 43k
`summary()` is just printing a particular `alpha`, but you can do: ``` summary(res, alpha = ...) ```
Answer: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Michael Love 43k
> DESeq2 treats this as a numeric variable with a range from 19560-19660 And it gives a warning to not use this type of covariate, which…
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
Yes, I did. Here is my code. data.path <- "~/GeoMx_best_practice/data/" filepath <- paste(data.path, "Joon_QC_NPC_4_…
Votes
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Awards • All
Popular Question to joseph.joonsang • 0
Popular Question to Hans-Ulrich Klein ▴ 330
Popular Question to shepherl 4.1k
Popular Question to Hervé Pagès 16k
Popular Question to Gordon Smyth 52k
Locations • All
United States, 8 minutes ago
Australia, 9 minutes ago
United States, 14 minutes ago
France, 20 minutes ago
Ireland, 29 minutes ago
Traffic: 703 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6