Bioconductor Epic microarray

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champ epic microarray normalization minfi

6.5 years ago Laura • 0

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1.4k

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minfi epic microarray bioconductor

updated 2.3 years ago by Lucy • 0 • written 6.6 years ago by c.sae-lee2 • 0

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2.2k

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bioconductor methylation epic microarray champ

6.8 years ago csappleby-mallinder1 • 0

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1.9k

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methylation epic microarray minfi methylationepic

7.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.7 years ago chelsey.ju • 0

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1.7k

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rnbeads methylation illumina epic microarray

8.2 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by Biologist ▴ 120

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1.8k

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minfi methylation EPIC microarray illumina

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by rasii • 0

8 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k