Bioconductor Epic microarray

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1.5k

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champ epic microarray normalization minfi

6.6 years ago Laura • 0

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1.5k

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minfi epic microarray bioconductor

updated 2.4 years ago by Lucy • 0 • written 6.8 years ago by c.sae-lee2 • 0

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2.3k

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bioconductor methylation epic microarray champ

6.9 years ago csappleby-mallinder1 • 0

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1.9k

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methylation epic microarray minfi methylationepic

7.8 years ago nhejazi • 0

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1.2k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.8 years ago chelsey.ju • 0

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1.7k

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rnbeads methylation illumina epic microarray

8.3 years ago rasii • 0

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3.2k

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.5 years ago by James W. MacDonald 67k • written 8.5 years ago by Biologist ▴ 120

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1.8k

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minfi methylation EPIC microarray illumina

updated 8.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.7 years ago by rasii • 0

8 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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