Bioconductor Epic microarray

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champ epic microarray normalization minfi

7.8 years ago Laura • 0

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1.7k

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minfi epic microarray bioconductor

updated 3.6 years ago by Lucy • 0 • written 7.9 years ago by c.sae-lee2 • 0

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2.6k

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bioconductor methylation epic microarray champ

8.1 years ago csappleby-mallinder1 • 0

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2.3k

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methylation epic microarray minfi methylationepic

8.9 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

9.0 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

9.5 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Biologist ▴ 120

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2.1k

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minfi methylation EPIC microarray illumina

updated 9.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.8 years ago by rasii • 0

8 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760