Bioconductor Epic microarray

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champ epic microarray normalization minfi

6.9 years ago Laura • 0

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1.5k

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minfi epic microarray bioconductor

updated 2.7 years ago by Lucy • 0 • written 7.0 years ago by c.sae-lee2 • 0

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2.3k

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bioconductor methylation epic microarray champ

7.2 years ago csappleby-mallinder1 • 0

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2.0k

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methylation epic microarray minfi methylationepic

8.1 years ago nhejazi • 0

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1.2k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.1 years ago chelsey.ju • 0

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1.8k

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rnbeads methylation illumina epic microarray

8.6 years ago rasii • 0

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3.4k

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by Biologist ▴ 120

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1.9k

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minfi methylation EPIC microarray illumina

updated 8.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.9 years ago by rasii • 0

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Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Votes

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

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