Showing : epic microarray • reset
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ChAMP functional normalization error "subscript out of bounds"
champ epic microarray normalization minfi
7.7 years ago Laura • 0
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2
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1.7k
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Error in read.metharray.exp
minfi epic microarray bioconductor
updated 3.5 years ago by • 0 • written 7.8 years ago by • 0
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Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor methylation epic microarray champ
8.0 years ago csappleby-mallinder1 • 0
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4
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2.2k
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minfi "mapToGenome" dimension error
methylation epic microarray minfi methylationepic
8.9 years ago nhejazi • 0
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Shinymethyl 850K Array quality control signal cutoffs
shinymethyl minfi epic microarray methylationepic qualitycontrol
8.9 years ago chelsey.ju • 0
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Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
9.4 years ago rasii • 0
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dmpFinder return value (minfi)
minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 120
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2.1k
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Error in Matrix
minfi methylation EPIC microarray illumina
updated 9.7 years ago by ★ 6.5k • written 9.7 years ago by • 0
8 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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