Bioconductor EstimateSizeFactors

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872

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locfunc DESeq2 shorth estimateSizeFactors

23 months ago Hope ▴ 10

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1.3k

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deseq2 estimatesizefactors

updated 7.2 years ago by Ryan C. Thompson ★ 7.9k • written 7.2 years ago by owenchapman1 • 0

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deseq2 LRT geometric mean estimatesizefactors model.matrix

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by carol.brunel • 0

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7.3k

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deseq2 error R estimatesizefactors zero

updated 3.8 years ago by LW • 0 • written 8.3 years ago by abhishek.yedugondla • 0

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2.1k

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deseq2 estimatesizefactors

8.1 years ago Lauma R ▴ 10

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4.5k

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deseq2 estimatesizefactors

updated 9.2 years ago by Steve Lianoglou ★ 13k • written 9.2 years ago by Assa Yeroslaviz ★ 1.5k

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deseq2 tximport rsem estimatesizefactors

9.7 years ago Hugo Varet ▴ 80

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13k

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deseq2 estimatesizefactors

updated 10.0 years ago by Michael Love 43k • written 10.0 years ago by ssabri ▴ 20

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2.3k

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phyloseq deseq2 estimatesizefactors

updated 10.1 years ago by Michael Love 43k • written 10.1 years ago by brandilyn.peters • 0

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estimatesizefactors deseq2

updated 10.3 years ago by Michael Love 43k • written 10.3 years ago by Mehmet Ilyas Cosacak • 0

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1.5k

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deseq2 estimatesizefactors

updated 10.8 years ago by Michael Love 43k • written 10.8 years ago by umut.caglar ▴ 10

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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