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exomecopy
•
reset
0
votes
4
replies
2.6k
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error in exomeCopy - IRanges?
IRanges
exomeCopy
IRanges
exomeCopy
updated 11.7 years ago by
love
▴ 150 • written 11.7 years ago by
Lescai, Francesco
▴ 380
0
votes
4
replies
2.4k
views
exomeCopy - memory error
exomeCopy
exomeCopy
updated 11.6 years ago by
love
▴ 150 • written 11.6 years ago by
Lescai, Francesco
▴ 380
0
votes
2
replies
1.5k
views
ExomeCopy error
exomeCopy
exomeCopy
updated 11.0 years ago by
Michael Love
41k • written 11.0 years ago by
Kevin Lee
▴ 40
1
vote
2
replies
1.3k
views
Journal articles for whole exome sequencing
exomecopy
exon array analysis
CODEX
9.0 years ago
kaushal Raj Chaudhary
▴ 10
0
votes
1
reply
1.3k
views
copyCountSegments(fit) failed exomeCopy
exomeCopy
exomeCopy
updated 12.0 years ago by
love
▴ 150 • written 12.0 years ago by
Dan Spiegelman
▴ 10
0
votes
1
reply
1.2k
views
exomeCopy copy number setting
cnv
exomecopy
updated 8.4 years ago by
Michael Love
41k • written 8.4 years ago by
cafelumiere12
▴ 20
0
votes
0
replies
1.1k
views
ExomeCopy package error
Sequencing
exomeCopy
Sequencing
exomeCopy
11.4 years ago
Guest User
★ 13k
0
votes
2
replies
1.1k
views
exomeCopy - no .Internal function 'cov' error
exomeCopy
exomeCopy
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Lescai, Francesco
▴ 380
0
votes
3
replies
1.0k
views
exomeCopy error with compileCopyCountSegments
exomecopy
cnv
6.3 years ago
ramakrishnas
• 0
0
votes
1
reply
975
views
exomeCopy Posterior Probabilities
exomecopy
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
sruddy17
• 0
0
votes
1
reply
925
views
question about using exomeCopy on a single exome sample
exomeCopy
exomeCopy
updated 11.0 years ago by
Michael Love
41k • written 11.0 years ago by
Guru Ananda
▴ 10
0
votes
0
replies
909
views
Fwd: ExomeCopy package error
Sequencing
exomeCopy
Sequencing
exomeCopy
11.4 years ago
love
▴ 150
0
votes
0
replies
859
views
copyCountSegments(fit) failed exomeCopy
exomeCopy
exomeCopy
12.1 years ago
love
▴ 150
0
votes
3
replies
772
views
exomeCopy error in col name
exomecopy
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
chiara.rigobello
• 0
0
votes
4
replies
692
views
exomeCopy compileCopyCountSegments error
exomeCopy
updated 4.8 years ago by
Michael Love
41k • written 4.8 years ago by
kkyung412
• 0
0
votes
1
reply
635
views
exomeCopy warning and error
exomeCopy
updated 23 months ago by
Michael Love
41k • written 23 months ago by
ef.kafantari
• 0
0
votes
0
replies
569
views
Applying exomeCopy to call CNVs withouts controls considering batch effects
exomeCopy
CNV
WES
3.1 years ago
Cheng
• 0
0
votes
1
reply
535
views
Discrepancy between plot colours during exomeCopy tutorial
exomeCopy
updated 23 months ago by
Michael Love
41k • written 23 months ago by
joel.wallenius
• 0
18 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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