Showing : featureCounts • reset
0
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2
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176
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
9 days ago Jessica • 0
4
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2
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284
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
6 weeks ago Rachael • 0
2
votes
4
replies
696
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Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
3 months ago • updated 6 weeks ago isaac.vock • 0
0
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0
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236
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Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
4 months ago chris2.a.white • 0
1
vote
1
reply
416
views
featureCounts unable to assign long reads to one specific isoform
featureCounts Rsubread
updated 4 months ago by ★ 3.6k • written 5 months ago by • 0
7
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28
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6.5k
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Rsubread::featureCounts extremely slow on some annotations
rsubread featurecounts
updated 5 months ago by 51k • written 9.4 years ago by ★ 7.9k
0
votes
4
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601
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Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts Rsubread
updated 5 months ago by 51k • written 5 months ago by • 0
4
votes
6
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885
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[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts Rsubread
6 months ago • updated 5 months ago isaac.vock • 0
0
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2
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3.8k
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Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 4.0 years ago by ▴ 80
0
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0
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1.2k
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Tutorial: Read data file containing both counts and annotation into edgeR
rpkm edgeR featureCounts
11 months ago • updated 10 months ago Gordon Smyth 51k
0
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2
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1.3k
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understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData Rsubread mapping featurecounts
updated 11 months ago by 66k • written 11 months ago by • 0
2
votes
2
replies
1.7k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps
updated 3 months ago by • 0 • written 8.1 years ago by ▴ 90
12 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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