Showing : featureCounts • reset
6
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5
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2.6k
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What is the importance of `--countReadPairs` in featureCounts on paired end data?
featureCounts DESeq2
updated 10 weeks ago by ▴ 20 • written 7 months ago by • 0
4
votes
8
replies
1.2k
views
Feature Counts - potential bug with outfile.jcounts
featurecounts Rsubread
3 months ago chris2.a.white • 0
4
votes
2
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1.1k
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
9 months ago Rachael • 0
2
votes
2
replies
1.9k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps
updated 11 months ago by • 0 • written 8.8 years ago by ▴ 90
2
votes
4
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1.1k
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
11 months ago • updated 9 months ago isaac.vock • 0
1
vote
2
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622
views
mates counted separately in case one mate is unmapped (when otherwise counting read pairs)
featureCounts Rsubread
7 months ago Anke • 0
1
vote
3
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931
views
featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
5 months ago yasmin.hilliam ▴ 10
0
votes
1
reply
589
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
updated 3 months ago by 52k • written 12 months ago by • 0
0
votes
1
reply
564
views
To count or not to count multi-overlapping reads?
RNA-Seq featureCounts Rsubread
updated 4 weeks ago by 52k • written 4 weeks ago by ▴ 80
0
votes
1
reply
364
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[BUG] featureCounts doesn't assign primary alignment of a multi-mapped read, even with `--primary` specified
featureCounts Rsubread
5 months ago isaac.vock • 0
0
votes
4
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872
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
8 months ago • updated 7 months ago Jessica • 0
0
votes
2
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4.4k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
updated 10 days ago by • 0 • written 4.7 years ago by ▴ 80
12 results • Page 1 of 1
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Comment: Problem at champ.load by Josh • 0
See my anser--I was able to fix this error by installing a specific ChAMP version
Answer: Problem at champ.load by Josh • 0
It looks like the current Bioconducter version of ChAMP (2.36) does not support EPICv2. You have to install a github version of a previous …
Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0
@mikelove Dear Dr. Love, for this design, you recommend using the model "~condition + time + condition:subject.nested + condition:time" com…
Answer: myvariant error by Christelle • 0
An example of my data : [1] "chr1:g.877831T>C" [2] "chr1:g.878314G>C" …
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by ATpoint ★ 4.7k
Why was my comment removed? It's irritating that it was moderated away without leaving any note.
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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