Bioconductor FeatureCounts

Showing : featureCounts • reset

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285

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featureCounts Rsubread

7 weeks ago • updated 4 weeks ago isaac.vock • 0

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1.6k

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rsubread featurecounts summarizeoverlaps

updated 7 weeks ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

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159

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FeatureCounts Rsubread

11 weeks ago chris2.a.white • 0

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296

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featureCounts Rsubread

updated 11 weeks ago by Wei Shi ★ 3.6k • written 3 months ago by Alex • 0

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6.2k

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rsubread featurecounts

updated 3 months ago by Gordon Smyth 50k • written 9.2 years ago by Ryan C. Thompson ★ 7.9k

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784

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featurecounts Rsubread

3 months ago isaac.vock • 0

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475

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featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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992

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rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

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1.1k

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RNASeqData Rsubread mapping featurecounts

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by vitoriastavis • 0

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4.8k

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subread featureCounts

updated 10 months ago by Yang Liao ▴ 380 • written 2.9 years ago by s.muroy ▴ 10

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684

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Rsubread featureCounts

updated 10 months ago by Yang Liao ▴ 380 • written 10 months ago by StevenE.Strong • 0

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2.3k

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featurecounts SAM htseqcounts

updated 10 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

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18k

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featurecounts rsubread

updated 11 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

14 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 65k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

Votes

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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