Bioconductor FlowSOM

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FlowSOM

updated 5 months ago by SamGG ▴ 350 • written 5 months ago by agus_rizzo • 0

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244

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FlowSOM

5 months ago agus_rizzo • 0

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532

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FlowSOM

updated 5 months ago by SamGG ▴ 350 • written 5 months ago by agus_rizzo • 0

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480

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FlowSOM cytofWorkflow

updated 13 months ago by helucro ▴ 70 • written 13 months ago by Anirban • 0

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780

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flowWorkspace CytoGLMM FlowSOM

2.4 years ago hbolouri • 0

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862

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FlowSOM

2.5 years ago jakub.savara • 0

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FlowSOM

2.8 years ago ismail.ameran • 0

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FlowSOM

updated 3.5 years ago by sofie.vangassen ▴ 10 • written 3.5 years ago by Václav • 0

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1.4k

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Cytofast FlowSom CyTOF fcs files

3.5 years ago domenico.somma • 0

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flowcytometry flowSOM flowSET flowFrame

5.0 years ago fabrizio.benedetti.82 • 0

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flowsom consensusclusterplus

7.1 years ago Lukas Weber • 0

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flowcore flowsom

7.7 years ago jeremyeadler • 0

12 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0