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galaxy
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DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large intragroup variability
DESeq2
Galaxy
pca
updated 14 months ago by
swbarnes2
★ 1.3k • written 14 months ago by
mbxdn1
• 0
0
votes
1
reply
849
views
Controlling for sex variance in Galaxy DESeq2
DESeq2
RNASeq
Galaxy
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
István
• 0
0
votes
3
replies
1.4k
views
StringTie output as Ballgown input
ballgown
StringTie
galaxy
rnaseq
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
lakshmi9c
• 0
0
votes
1
reply
487
views
deseq2 for enrichments between different subcellular fractions?
deseq2
galaxy
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
mikelirastor
• 0
1
vote
3
replies
1.4k
views
Running DESeq2 inside local Galaxy instance
deseq2
galaxy
7.0 years ago
gkuffel
▴ 10
0
votes
2
replies
1.3k
views
Data analysis in R
bioconductor
next-generation sequencing
galaxy
updated 7.3 years ago by
Lucas Schiffer
▴ 240 • written 7.4 years ago by
efraim.culfa
• 0
0
votes
2
replies
1.1k
views
Inverting order of groups when using DESeq2
DESeq2
Galaxy
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
Marcelo Pereira
▴ 70
0
votes
4
replies
4.0k
views
Using DESeq2 inside Galaxy
rnaseq
galaxy
deseq2
updated 8.1 years ago by
Michael Love
41k • written 8.2 years ago by
Marcelo Pereira
▴ 70
8 results • Page
1 of 1
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Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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