Bioconductor Gene expression data

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limma lumi illumina gene expression data

updated 3.4 years ago by mohammedtoufiq91 ▴ 10 • written 6.9 years ago by Harpreet Kaur • 0

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frma expr gene expression data affy

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by osieman52 • 0

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gene expression gene expression data cel affy affymatrix

7.3 years ago torgeirous • 0

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rna-seq computational biology cns disease gene expression data neurodegeneration Job

7.6 years ago mmartin ▴ 20

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data integration clinicaldata gene expression data PET

9.6 years ago svlachavas ▴ 840

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Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

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Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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