Bioconductor Geneset

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975

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geneset GeneSetEnrichment msigdb

18 months ago Seongsu • 0

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2.1k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by manuelsokolov • 0

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3.6k

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singscore GSVA GSEA subtypes geneset

updated 4.7 years ago by Dharmesh D Bhuva • 0 • written 6.5 years ago by Pietro ▴ 40

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1.4k

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GSVA geneset RNASeq TCGA subtypes

6.7 years ago Pietro ▴ 40

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2.6k

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kegg geneset genelist gage package

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by sup230 ▴ 30

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2.1k

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gseabase geneset

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by siajunren • 0

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1.7k

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cummerbund readcufflinks geneset

9.7 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Answer: DiffBind - question on the use of filtered or unfiltered input data by vejogos850 • 0

DiffBind - question on the use of filtered or unfiltered input data is the best to deal with, and it provides us the solutions that we are …

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …