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geneset
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0
votes
2
replies
996
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How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
18 months ago
Seongsu
• 0
0
votes
1
reply
2.1k
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
manuelsokolov
• 0
2
votes
4
replies
3.6k
views
Are singscore scores comparable between gene sets?
singscore
GSVA
GSEA
subtypes
geneset
updated 4.8 years ago by
Dharmesh D Bhuva
• 0 • written 6.6 years ago by
Pietro
▴ 40
0
votes
0
replies
1.4k
views
Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
GSVA
geneset
RNASeq
TCGA
subtypes
6.8 years ago
Pietro
▴ 40
2
votes
4
replies
2.6k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 8.2 years ago by
Gordon Smyth
53k • written 8.2 years ago by
sup230
▴ 30
1
vote
2
replies
2.1k
views
Question on GeneSetCollection in GSEABase
gseabase
geneset
updated 8.7 years ago by
Martin Morgan
25k • written 8.8 years ago by
siajunren
• 0
0
votes
0
replies
1.7k
views
Problems in building Cummerbundcuff Database
cummerbund
readcufflinks
geneset
9.8 years ago
alessio.stevano
• 0
7 results • Page
1 of 1
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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