Bioconductor Geneset

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996

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geneset GeneSetEnrichment msigdb

18 months ago Seongsu • 0

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2.1k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by manuelsokolov • 0

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3.6k

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singscore GSVA GSEA subtypes geneset

updated 4.8 years ago by Dharmesh D Bhuva • 0 • written 6.6 years ago by Pietro ▴ 40

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1.4k

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GSVA geneset RNASeq TCGA subtypes

6.8 years ago Pietro ▴ 40

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2.6k

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kegg geneset genelist gage package

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by sup230 ▴ 30

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2.1k

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gseabase geneset

updated 8.7 years ago by Martin Morgan 25k • written 8.8 years ago by siajunren • 0

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1.7k

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cummerbund readcufflinks geneset

9.8 years ago alessio.stevano • 0

7 results • Page 1 of 1

Recent ...

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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