Showing : geneset • reset
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
21 months ago Seongsu • 0
0
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1
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2.3k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
2
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4
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3.8k
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Are singscore scores comparable between gene sets?
singscore GSVA GSEA subtypes geneset
updated 5.0 years ago by • 0 • written 6.8 years ago by ▴ 40
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Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
GSVA geneset RNASeq TCGA subtypes
7.0 years ago Pietro ▴ 40
2
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4
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2.8k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.4 years ago by 53k • written 8.4 years ago by ▴ 30
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2
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2.3k
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Question on GeneSetCollection in GSEABase
gseabase geneset
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
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1.8k
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Problems in building Cummerbundcuff Database
cummerbund readcufflinks geneset
10.0 years ago alessio.stevano • 0
7 results • Page 1 of 1
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: Quality control of shotgun metagenomics data by James W. MacDonald 68k
This support site is meant primarily for helping people with technical questions about using Bioconductor packages. For general analysis qu…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
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Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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