Bioconductor Geneset

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1.1k

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geneset GeneSetEnrichment msigdb

20 months ago Seongsu • 0

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2.1k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by manuelsokolov • 0

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3.7k

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singscore GSVA GSEA subtypes geneset

updated 4.9 years ago by Dharmesh D Bhuva • 0 • written 6.7 years ago by Pietro ▴ 40

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1.6k

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GSVA geneset RNASeq TCGA subtypes

6.9 years ago Pietro ▴ 40

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2.7k

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kegg geneset genelist gage package

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by sup230 ▴ 30

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2.2k

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gseabase geneset

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by siajunren • 0

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cummerbund readcufflinks geneset

9.9 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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