Bioconductor GenomeIntervals

Showing : genomeIntervals • reset

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774

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genomeIntervals GenomicRanges

20 months ago gshweta95 • 0

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granges bed genomicranges genomeintervals deseq2

7.8 years ago rbronste ▴ 60

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genomeintervals UTRs exons CDS GenomicRanges

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by rubi ▴ 110

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nclist genomeintervals

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by Jurat Shahidin ▴ 80

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genomeIntervals

updated 10.4 years ago by Nicolas Delhomme ▴ 320 • written 10.7 years ago by mhz • 0

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genomeintervals

updated 10.4 years ago by Nicolas Delhomme ▴ 320 • written 10.4 years ago by sjackman • 0

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.7 years ago by Dan Tenenbaum ★ 8.2k • written 12.7 years ago by Wim Kreinen ▴ 100

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Annotation convert genomeIntervals Annotation convert genomeIntervals

13.7 years ago delhomme@embl.de ★ 1.2k

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genomeIntervals genomeIntervals

updated 14.6 years ago by Hervé Pagès 16k • written 14.6 years ago by Julien Gagneur ▴ 50

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

15.8 years ago Robert Castelo ★ 3.4k

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Comment: Getting a large intercept with DESeq2 by Denise • 0

Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …

Comment: Error installing Seqinfo by shepherl 4.2k

Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week

Comment: APAlyzer by shepherl 4.2k

We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

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Answer: replace cat with message in glmTreat when lfc = 0

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

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