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genomeintervals
•
reset
0
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123
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Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals
GenomicRanges
6 weeks ago
gshweta95
• 0
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.3 years ago
rbronste
▴ 60
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
rubi
▴ 110
3
votes
2
replies
1.3k
views
What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist
genomeintervals
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
Jurat Shahidin
▴ 80
0
votes
1
reply
1.2k
views
cannot load genomeIntervals package
genomeIntervals
updated 8.9 years ago by
Nicolas Delhomme
▴ 320 • written 9.1 years ago by
mhz
• 0
1
vote
8
replies
1.6k
views
Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 8.9 years ago by
Nicolas Delhomme
▴ 320 • written 8.9 years ago by
sjackman
• 0
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.2 years ago by
Dan Tenenbaum
★ 8.2k • written 11.2 years ago by
Wim Kreinen
▴ 100
0
votes
0
replies
885
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation
convert
genomeIntervals
Annotation
convert
genomeIntervals
12.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
921
views
gff files: how to tell if right-open interval convention used?
genomeIntervals
genomeIntervals
updated 13.1 years ago by
Hervé Pagès
16k • written 13.1 years ago by
Julien Gagneur
▴ 50
0
votes
0
replies
1.1k
views
stranded findOverlaps
Sequencing
Annotation
GO
rtracklayer
IRanges
genomeIntervals
Sequencing
Annotation
GO
14.3 years ago
Robert Castelo
★ 3.3k
10 results • Page
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Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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