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genomeintervals
•
reset
0
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108
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals
GenomicRanges
4 weeks ago
gshweta95
• 0
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.3 years ago
rbronste
▴ 60
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
rubi
▴ 110
3
votes
2
replies
1.3k
views
What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist
genomeintervals
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
Jurat Shahidin
▴ 80
0
votes
1
reply
1.2k
views
cannot load genomeIntervals package
genomeIntervals
updated 8.8 years ago by
Nicolas Delhomme
▴ 320 • written 9.1 years ago by
mhz
• 0
1
vote
8
replies
1.6k
views
Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 8.8 years ago by
Nicolas Delhomme
▴ 320 • written 8.9 years ago by
sjackman
• 0
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
Wim Kreinen
▴ 100
0
votes
0
replies
879
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation
convert
genomeIntervals
Annotation
convert
genomeIntervals
12.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
915
views
gff files: how to tell if right-open interval convention used?
genomeIntervals
genomeIntervals
updated 13.1 years ago by
Hervé Pagès
16k • written 13.1 years ago by
Julien Gagneur
▴ 50
0
votes
0
replies
1.0k
views
stranded findOverlaps
Sequencing
Annotation
GO
rtracklayer
IRanges
genomeIntervals
Sequencing
Annotation
GO
14.2 years ago
Robert Castelo
★ 3.3k
10 results • Page
1 of 1
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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