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genomicfiles
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.8 years ago
koushik
• 0
2
votes
6
replies
1.2k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.2 years ago
robmaz77
▴ 20
1
vote
2
replies
734
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Qiang
▴ 80
3
votes
2
replies
956
views
ranges input for GenomicFiles
genomicfiles
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
Qiang
▴ 80
3
votes
2
replies
1.1k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles
reduceByRange
updated 6.6 years ago by
Valerie Obenchain
★ 6.8k • written 6.6 years ago by
maltethodberg
▴ 170
3
votes
3
replies
1.1k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles
BiocParallel
updated 6.8 years ago by
shepherl
3.8k • written 6.9 years ago by
m.van_iterson
▴ 20
4
votes
2
replies
1.3k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools
genomicalignments
genomicfiles
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
jfiksel
▴ 30
1
vote
1
reply
1.4k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles
rsamtools
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
victoriaccorey
▴ 10
2
votes
2
replies
2.5k
views
How to randomly sample BAM files
rsamtools
genomicalignments
genomicfiles
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Welliton de Souza
▴ 70
0
votes
0
replies
972
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO
Biostrings
rtracklayer
GenomicRanges
BiocParallel
GenomicFiles
9.6 years ago
Dan Tenenbaum
★ 8.2k
10 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
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by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
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russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
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Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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