Showing : genomicfiles • reset
6
votes
7
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2.0k
views
findOverlaps(), queryHits and subjectHits()
GenomicFiles
updated 15 months ago by 16k • written 15 months ago by • 0
0
votes
0
replies
902
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
4.3 years ago koushik • 0
2
votes
6
replies
1.8k
views
memory leak when subsampling BAM
GenomicFiles ShortRead Rsamtools
4.7 years ago robmaz77 ▴ 20
1
vote
2
replies
1.1k
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 80
3
votes
2
replies
1.3k
views
ranges input for GenomicFiles
genomicfiles
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 80
3
votes
2
replies
1.5k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles reduceByRange
updated 8.2 years ago by ★ 6.8k • written 8.2 years ago by ▴ 180
3
votes
3
replies
1.5k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles BiocParallel
updated 8.3 years ago by 4.2k • written 8.4 years ago by ▴ 20
4
votes
2
replies
1.7k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools genomicalignments genomicfiles
updated 9.3 years ago by 16k • written 9.3 years ago by ▴ 30
1
vote
1
reply
2.0k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles rsamtools
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 10
2
votes
2
replies
3.0k
views
How to randomly sample BAM files
rsamtools genomicalignments genomicfiles
updated 10.2 years ago by 25k • written 10.2 years ago by ▴ 70
0
votes
0
replies
1.2k
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles
11.1 years ago Dan Tenenbaum ★ 8.2k
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We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
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Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
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You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
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Thanks ! Do you have any idea how to do that ?
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The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
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