Bioconductor Genomicfiles

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GenomicFiles

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by user_bioinfo • 0

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770

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.5 years ago koushik • 0

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1.5k

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GenomicFiles ShortRead Rsamtools

3.9 years ago robmaz77 ▴ 20

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GenomicFiles

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by Qiang ▴ 80

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1.1k

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genomicfiles

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by Qiang ▴ 80

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1.3k

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genomicfiles reduceByRange

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by maltethodberg ▴ 180

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1.3k

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GenomicFiles BiocParallel

updated 7.5 years ago by shepherl 4.1k • written 7.6 years ago by m.van_iterson ▴ 20

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1.5k

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rsamtools genomicalignments genomicfiles

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by jfiksel ▴ 30

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1.7k

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genomicfiles rsamtools

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by victoriaccorey ▴ 10

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2.8k

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rsamtools genomicalignments genomicfiles

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by Welliton de Souza ▴ 70

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1.1k

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GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles

10.3 years ago Dan Tenenbaum ★ 8.2k

11 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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