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Showing :
geometadb
•
reset
7
votes
5
replies
6.1k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.9 years ago by
Sean Davis
21k
3
votes
0
replies
3.8k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
8.9 years ago
Sean Davis
21k
0
votes
13
replies
2.9k
views
GEOmetadb and gse organism type
Cancer
Breast
Organism
GEOmetadb
Cancer
Breast
Organism
GEOmetadb
updated 15.1 years ago by
Sean Davis
21k • written 15.1 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
4
replies
2.1k
views
Meta data for gene from GEO
GEOquery
GEOmetadb
GEOquery
GEOmetadb
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
Guest User
★ 13k
0
votes
5
replies
2.1k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.7 years ago by
Alex Levitchi
▴ 30 • written 13.7 years ago by
Sean Davis
21k
0
votes
1
reply
2.0k
views
Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
updated 10.4 years ago by
Sean Davis
21k • written 10.4 years ago by
rohan bareja
▴ 200
5
votes
3
replies
2.0k
views
Cannot download GEOmetadb sqlite file
GEOmetadb
updated 3 months ago by
ilayahari
• 0 • written 6.5 years ago by
arnaud.ceol.pro
▴ 10
0
votes
0
replies
2.0k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
15.2 years ago
Jack Zhu
▴ 170
0
votes
1
reply
1.8k
views
GEOmetadb: problem with SQLite database download
GEOmetadb
GEOmetadb
14.4 years ago
Axel Klenk
★ 1.0k
0
votes
0
replies
1.7k
views
Fw: Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
10.4 years ago
rohan bareja
▴ 200
0
votes
2
replies
1.6k
views
GEOmetadb query to retrieve sample groups
GEOmetadb
GEOmetadb
updated 10.9 years ago by
Sean Davis
21k • written 10.9 years ago by
Thomas Hampton
▴ 750
0
votes
4
replies
1.5k
views
GEOquery using keywords in R
GEO
geoquery
geometadb
updated 5.9 years ago by
Sean Davis
21k • written 5.9 years ago by
Didi
▴ 10
0
votes
0
replies
1.5k
views
Solved: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
15.6 years ago
gregory voisin
▴ 430
0
votes
1
reply
1.5k
views
dynamic library() calls
GEOmetadb
GEOmetadb
13.9 years ago
Jeremiah H. Savage
▴ 110
0
votes
1
reply
1.4k
views
GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.4k
views
getGEO vs GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
10.9 years ago
Jack Zhu
▴ 170
3
votes
2
replies
1.4k
views
Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
geometadb
GEO
R
bioconductor
updated 5.8 years ago by
Sean Davis
21k • written 5.8 years ago by
gaby8638
▴ 20
0
votes
0
replies
1.3k
views
problem with GEOquery
GEOmetadb
GEOmetadb
15.8 years ago
Sean Davis
21k
0
votes
2
replies
1.3k
views
GEOmetadb query
aCGH
GO
aCGH
GEOmetadb
aCGH
GO
aCGH
GEOmetadb
updated 14.3 years ago by
Jack Zhu
▴ 170 • written 14.3 years ago by
BorisZybailov@gmail.com
▴ 10
0
votes
0
replies
1.3k
views
getGEO for very large files
GO
GEOmetadb
GO
GEOmetadb
13.0 years ago
Sean Davis
21k
0
votes
0
replies
1.3k
views
GEOquery question -- suppressing download for GPL queries?
Annotation
GEOquery
GEOmetadb
Annotation
GEOquery
GEOmetadb
14.2 years ago
Sean Davis
21k
2
votes
1
reply
1.2k
views
GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs
geometadb
updated 6.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 6.6 years ago by
Bohdan Khomtchouk
▴ 10
0
votes
1
reply
1.1k
views
GEOmetadb urgent question!
R
geometadb
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
vasco.cluny
• 0
0
votes
2
replies
1.0k
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
20 months ago
jfertaj
▴ 30
1
vote
2
replies
715
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 10 months ago by
malat1_t
▴ 10
5
votes
2
replies
684
views
outdated GEOmetadb.sqlite
GEOmetadb
14 months ago • updated 3 months ago
Robert Castelo
★ 3.3k
1
vote
1
reply
489
views
Why dbConnect GEOmetadb_demo.sqlite shows some information while dbConnect GEOmetadb.sqlite shows no information
GEOmetadb
GEOmetadb.sqlite
dbConnect
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Lee
▴ 10
27 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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