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glmlrt()
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2
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2
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1.8k
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
7.1 years ago
oakhamwolf
• 0
4
votes
15
replies
2.7k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
9.1 years ago • updated 8.4 years ago
elineverbon
▴ 20
0
votes
7
replies
4.3k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
8.6 years ago
Jeff Skinner
• 0
1
vote
6
replies
1.6k
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
8.9 years ago
simarsidhu25
• 0
4
votes
7
replies
3.5k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
8.9 years ago
simarsidhu25
• 0
7
votes
5
replies
4.4k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 10.0 years ago by
Aaron Lun
★ 29k • written 10.0 years ago by
cadeans
• 0
4
votes
8
replies
2.4k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 10.4 years ago by
Gordon Smyth
53k • written 10.4 years ago by
carlgdeboer
• 0
5
votes
7
replies
4.7k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
MBWatson
• 0
6
votes
7
replies
7.9k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 10.9 years ago by
Aaron Lun
★ 29k • written 10.9 years ago by
Ekarl2
▴ 80
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Comment: Bioconductor 3.22 Release Schedule
by
loganlstevens
• 0
This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.
Answer: Create consensusMatrix for codon bases
by
Kevin Blighe
★ 4.0k
To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: sigDF object in sesame
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Kevin Blighe
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Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…
Answer: DESeq2 on non-RNASeq counts data
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Kevin Blighe
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The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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