Showing : glmlrt() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.1 years ago oakhamwolf • 0
4
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15
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2.1k
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Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.1 years ago • updated 7.4 years ago elineverbon ▴ 20
0
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7
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3.9k
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Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
7.6 years ago Jeff Skinner • 0
1
vote
6
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1.3k
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design of edgeR GLM test
edger differential gene expression glmlrt()
7.9 years ago simarsidhu25 • 0
4
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7
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3.1k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
7.9 years ago simarsidhu25 • 0
7
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5
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3.9k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.0 years ago by ★ 28k • written 9.0 years ago by • 0
4
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8
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2.1k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 9.4 years ago by 51k • written 9.4 years ago by • 0
5
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7
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4.2k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 9.7 years ago by 67k • written 9.7 years ago by • 0
6
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7
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7.4k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 9.9 years ago by ★ 28k • written 9.9 years ago by ▴ 80
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
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Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
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Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
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You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
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It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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