Bioconductor Glmlrt()

Showing : glmlrt() • reset

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1.5k

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edger design matrix glmlrt() glmQFTest() paired design

6.3 years ago oakhamwolf • 0

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2.2k

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EdgeR glmlrt() ql f-test

8.3 years ago • updated 7.6 years ago elineverbon ▴ 20

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4.0k

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edger contrast covariate glmlrt()

7.8 years ago Jeff Skinner • 0

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edger differential gene expression glmlrt()

8.1 years ago simarsidhu25 • 0

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3.2k

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edger differential gene expression glmlrt()

8.1 years ago simarsidhu25 • 0

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4.0k

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edger glmfit glmlrt()

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by cadeans • 0

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edger glmlrt() differential expression design and contrast matrix

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by carlgdeboer • 0

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4.3k

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edger rnaseq glmlrt()

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by MBWatson • 0

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7.5k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 10.1 years ago by Aaron Lun ★ 28k • written 10.1 years ago by Ekarl2 ▴ 80

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k