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gmapR
•
reset
0
votes
0
replies
261
views
gmapR source package contains x86_64 binaries
gmapR
6 months ago
Tom Lin
• 0
0
votes
1
reply
699
views
gmapR install failed
gmapR
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
conbward
• 0
1
vote
4
replies
1.2k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.8 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.4k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.1k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
karl.nordstroem
• 0
0
votes
4
replies
1.7k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.4k
views
gmapR failure to build TP53Genome in osx
gmapR
8.0 years ago
jls2282
• 0
3
votes
6
replies
1.7k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.9 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
sean.taylor
• 0
0
votes
10
replies
2.2k
views
Running gmap tool via gmapR package?
gmapR
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.1k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.4k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.7k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.5 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.0k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.9 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.1k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
11.0 years ago • updated 10.9 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.4k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.5 years ago by
Michael Lawrence
★ 11k • written 11.5 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.6k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.3k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Guest User
★ 13k
0
votes
2
replies
2.4k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.8 years ago by
Michael Lawrence
★ 11k • written 11.8 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.3k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
12.2 years ago
Martin Morgan
25k
19 results • Page
1 of 1
Recent ...
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Comment: ANOVA like approach of edgeR
by
Gordon Smyth
52k
To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …
Comment: DESeq2 sizefactors counfounded with biological treatment
by
Anna
• 0
Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…
Comment: ANOVA like approach of edgeR
by
Talip
▴ 10
I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…
Comment: Merge Replicates vs Mixed Model
by
gabriel.hoffman
▴ 160
It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…
Comment: makeContrastsDream for Interaction
by
gabriel.hoffman
▴ 160
The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…
Votes
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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