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gmapR
•
reset
0
votes
5
replies
1.9k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.4 years ago
Thomas Girke
★ 1.7k
0
votes
3
replies
2.5k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.0 years ago
lelemraposo
• 0
0
votes
1
reply
1.3k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.0 years ago by
Michael Lawrence
★ 11k • written 11.0 years ago by
Robert Castelo
★ 3.3k
0
votes
1
reply
557
views
gmapR install failed
gmapR
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
conbward
• 0
0
votes
2
replies
1.2k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Guest User
★ 13k
0
votes
3
replies
944
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
karl.nordstroem
• 0
0
votes
5
replies
1.2k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
Amer Ghalawinji
• 0
1
vote
4
replies
991
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.2 years ago
Kyle Johnsen
▴ 30
0
votes
2
replies
2.2k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.3 years ago by
Michael Lawrence
★ 11k • written 11.3 years ago by
Tim Triche
★ 4.2k
0
votes
10
replies
1.9k
views
Running gmap tool via gmapR package?
gmapR
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Thomas Sandmann
▴ 90
1
vote
4
replies
1.2k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Johannes Rainer
★ 2.0k
1
vote
17
replies
1.9k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Johannes Rainer
★ 2.0k
3
votes
6
replies
1.4k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
sean.taylor
• 0
0
votes
4
replies
1.5k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Kyle Johnsen
▴ 30
0
votes
0
replies
1.5k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
903
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.3 years ago
Chao-Jen Wong
▴ 580
0
votes
0
replies
1.1k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
11.7 years ago
Martin Morgan
25k
1
vote
4
replies
1.2k
views
gmapR failure to build TP53Genome in osx
gmapR
7.4 years ago
jls2282
• 0
18 results • Page
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Recent ...
Replies
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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DevelopingHippo
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Robert Castelo
★ 3.3k
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