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gmapr
•
reset
0
votes
0
replies
442
views
gmapR source package contains x86_64 binaries
gmapR
16 months ago
Tom Lin
• 0
0
votes
1
reply
851
views
gmapR install failed
gmapR
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
conbward
• 0
1
vote
4
replies
1.4k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
6.7 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.7k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.4k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
karl.nordstroem
• 0
0
votes
4
replies
2.0k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.6k
views
gmapR failure to build TP53Genome in osx
gmapR
8.9 years ago
jls2282
• 0
3
votes
6
replies
1.9k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 9.7 years ago by
Michael Lawrence
★ 11k • written 9.7 years ago by
sean.taylor
• 0
0
votes
10
replies
2.6k
views
Running gmap tool via gmapR package?
gmapR
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.7k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.6k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.9k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
10.4 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.2k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
10.7 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.5k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
11.9 years ago • updated 11.8 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.5k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.8k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
12.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.4k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 12.7 years ago by
Martin Morgan
25k • written 12.7 years ago by
Guest User
★ 13k
0
votes
2
replies
2.6k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 12.7 years ago by
Michael Lawrence
★ 11k • written 12.7 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.4k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
13.1 years ago
Martin Morgan
25k
19 results • Page
1 of 1
Recent ...
Replies
Comment: gene Set with high AUC score but no cells assigned to cell type
by
eja.hdrer33ge.r.m
• 0
Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA
by
Michael Love
43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
James W. MacDonald
68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Votes
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
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ubjw24
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Gordon Smyth
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Hervé Pagès
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shepherl
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