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gmapr
•
reset
0
votes
0
replies
491
views
gmapR source package contains x86_64 binaries
gmapR
20 months ago
Tom Lin
• 0
0
votes
1
reply
902
views
gmapR install failed
gmapR
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
conbward
• 0
1
vote
4
replies
1.5k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
6.9 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.8k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.5k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
karl.nordstroem
• 0
0
votes
4
replies
2.1k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.7k
views
gmapR failure to build TP53Genome in osx
gmapR
9.1 years ago
jls2282
• 0
3
votes
6
replies
2.1k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 10.0 years ago by
Michael Lawrence
★ 11k • written 10.0 years ago by
sean.taylor
• 0
0
votes
10
replies
2.8k
views
Running gmap tool via gmapR package?
gmapR
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.2 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.8k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.1 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.7k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 10.2 years ago by
Michael Lawrence
★ 11k • written 10.2 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
3.0k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
10.7 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.2k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
11.0 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.6k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
12.1 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.6k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 12.7 years ago by
Michael Lawrence
★ 11k • written 12.7 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.8k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
12.8 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.5k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 12.9 years ago by
Martin Morgan
25k • written 12.9 years ago by
Guest User
★ 13k
0
votes
2
replies
2.6k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 13.0 years ago by
Michael Lawrence
★ 11k • written 13.0 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.4k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
13.4 years ago
Martin Morgan
25k
19 results • Page
1 of 1
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Answer: Are individual-mouse-based statistics possible in CellChat?
by
ATpoint
★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
by
ATpoint
★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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