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gmapr
•
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0
votes
0
replies
269
views
gmapR source package contains x86_64 binaries
gmapR
6 months ago
Tom Lin
• 0
0
votes
1
reply
703
views
gmapR install failed
gmapR
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
conbward
• 0
1
vote
4
replies
1.2k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.8 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.5k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.1k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
karl.nordstroem
• 0
0
votes
4
replies
1.7k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.4k
views
gmapR failure to build TP53Genome in osx
gmapR
8.0 years ago
jls2282
• 0
3
votes
6
replies
1.7k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.9 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
sean.taylor
• 0
0
votes
10
replies
2.2k
views
Running gmap tool via gmapR package?
gmapR
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.1k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.4k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.7k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.5 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.0k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.9 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.1k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
11.0 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.4k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.6 years ago by
Michael Lawrence
★ 11k • written 11.6 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.6k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.3k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Guest User
★ 13k
0
votes
2
replies
2.4k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.8 years ago by
Michael Lawrence
★ 11k • written 11.8 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.3k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
12.3 years ago
Martin Morgan
25k
19 results • Page
1 of 1
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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mikat
• 0
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Hans-Ulrich Klein
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