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gmapr
•
reset
0
votes
0
replies
452
views
gmapR source package contains x86_64 binaries
gmapR
17 months ago
Tom Lin
• 0
0
votes
1
reply
860
views
gmapR install failed
gmapR
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
conbward
• 0
1
vote
4
replies
1.4k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
6.7 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.8k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.4k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 8.0 years ago by
Michael Lawrence
★ 11k • written 8.0 years ago by
karl.nordstroem
• 0
0
votes
4
replies
2.0k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.7k
views
gmapR failure to build TP53Genome in osx
gmapR
8.9 years ago
jls2282
• 0
3
votes
6
replies
2.0k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 9.8 years ago by
Michael Lawrence
★ 11k • written 9.8 years ago by
sean.taylor
• 0
0
votes
10
replies
2.7k
views
Running gmap tool via gmapR package?
gmapR
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 10.0 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.7k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.7k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 10.0 years ago by
Michael Lawrence
★ 11k • written 10.0 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.9k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
10.5 years ago
lelemraposo
▴ 10
0
votes
0
replies
1.2k
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
10.8 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.5k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
11.9 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.6k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 12.5 years ago by
Michael Lawrence
★ 11k • written 12.5 years ago by
Robert Castelo
★ 3.4k
0
votes
0
replies
1.8k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
12.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.4k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 12.7 years ago by
Martin Morgan
25k • written 12.7 years ago by
Guest User
★ 13k
0
votes
2
replies
2.6k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 12.7 years ago by
Michael Lawrence
★ 11k • written 12.8 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.4k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
13.2 years ago
Martin Morgan
25k
19 results • Page
1 of 1
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Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source
by
igkryycpinmshzugby
• 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source
by
James W. MacDonald
68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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