Biostar Go enrichment

Showing : go enrichment • reset

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2.5k

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clusterProfiler GO GO enrichment genesetenrichment

updated 7 months ago by pengmin.wang.1 • 0 • written 5.2 years ago by Huang, Lei [BSD] - CRI ▴ 20

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1.5k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 5.9 years ago by Valerie Obenchain ★ 6.7k • written 5.9 years ago by ivozeller • 0

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1.6k

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bacteria GO enrichment

updated 7.5 years ago by Marc Carlson ★ 7.2k • written 7.5 years ago by ksw ▴ 20

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1.1k

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rnaseq topgo go enrichment

updated 4.2 years ago by James W. MacDonald 62k • written 4.2 years ago by jgg • 0

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959

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chipseq go enrichment clusterprofiler

updated 4.9 years ago by Guangchuang Yu ★ 1.2k • written 4.9 years ago by Javier Pérez Florido ▴ 840

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1.4k

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clusterprofiler go enrichment functional enrichment

updated 4.2 years ago by Guangchuang Yu ★ 1.2k • written 4.2 years ago by Jack • 0

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676

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gosemsim go enrichment go semantic similarity

4.2 years ago nooshin ▴ 300

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1.4k

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go enrichment gene ontology goseq go

3.4 years ago Raito92 ▴ 60

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803

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go enrichment topgo d.ananassae

updated 6.6 years ago by James W. MacDonald 62k • written 6.6 years ago by koeniger ▴ 10

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2.8k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 5.0 years ago by Michael Love 39k • written 5.0 years ago by josef.oeckl • 0

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607

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goseq go enrichment

4.6 years ago mart1139 • 0

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826

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topgo ks score kolmogorov-smirnov test go enrichment

updated 4.6 years ago by Lluís Revilla Sancho ▴ 710 • written 4.6 years ago by eagomezc • 0

12 results • Page 1 of 1

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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10

Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…

Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…

Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k

Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…

Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0

> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…

Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k

I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…

Votes

Answer: Which input file is used for DGEList in EgdeR?

Answer: Identifying DEGs using lfcshrink()

Answer: Is this DESeq2 interactions design correct?

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k