Bioconductor Go

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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 5 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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246

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 8 weeks ago by belinda.phipson ▴ 40 • written 8 weeks ago by s.malik • 0

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337

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GO limma CAMERA

updated 11 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Tyler Sagendorf ▴ 10

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386

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GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

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549

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GO ensembldb

6 months ago Rockbar • 0

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419

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

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612

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GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 12 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

8 results • Page 1 of 1

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Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0

Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…

Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k

Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0

Thank you! The resource I use may mispresent the requirement input of fgsea.

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260

fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Robert for an educative response!

Votes

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)

Comment: Why p value inconsistent when using different number of pathway score?

Awards • All

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260