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GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
13.2 years ago Guangchuang Yu ★ 1.2k
0
votes
2
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1.2k
views
topGO: full-length descriptions in graph output
GO topGO GO topGO
updated 13.2 years ago by 68k • written 13.2 years ago by ★ 13k
0
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2
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2.8k
views
counting RNA-seq reads in R/BioC
GO Infrastructure Rsubread easyRNASeq GO Infrastructure Rsubread easyRNASeq
updated 13.2 years ago by ★ 6.8k • written 13.2 years ago by ▴ 880
0
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13
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2.6k
views
Analysis affymetrix of experiment....help please
GO GO
updated 13.2 years ago by 21k • written 13.2 years ago by ▴ 290
0
votes
1
reply
3.0k
views
Integer overflow when summing an 'integer' Rle
Coverage GO Cancer convert IRanges Coverage GO Cancer convert IRanges
updated 13.2 years ago by ★ 1.2k • written 13.2 years ago by ★ 6.8k
0
votes
1
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1.8k
views
AnnotationDbi : makeOrgPackageFromNCBI fails for 'Oryctolagus cuniculus' (Rabbit - tax id : 9986)
GO AnnotationDbi GO AnnotationDbi
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 40
1
vote
1
reply
3.4k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 13.2 years ago by ▴ 100 • written 13.2 years ago by ▴ 140
0
votes
3
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2.7k
views
CAMERA for non-directional gene sets
GO limma CAMERA GO limma CAMERA
updated 13.2 years ago by ▴ 120 • written 13.2 years ago by ▴ 20
0
votes
2
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1.2k
views
Cannot construct AnnotationDb for GOStats
GO affy GOstats biomaRt GO affy GOstats biomaRt
13.2 years ago wrighth ▴ 260
0
votes
1
reply
876
views
Data set for comparing statistical tests
GO limma GO limma
updated 13.2 years ago by ★ 4.2k • written 13.2 years ago by ▴ 160
0
votes
1
reply
2.3k
views
ChipPeakAnno / GRanges isolate peaks that do NOT overlap
GO GUI BSgenome BSgenome GO GUI BSgenome BSgenome
updated 13.2 years ago by ★ 4.3k • written 13.2 years ago by ▴ 110
0
votes
4
replies
3.9k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 13.2 years ago by ▴ 70
0
votes
1
reply
1.0k
views
clustering genes in GO categories
GO GO
updated 13.2 years ago by 25k • written 13.2 years ago by ★ 1.5k
0
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0
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1.0k
views
question about edgeR smearPlot
GO edgeR GO edgeR
13.2 years ago Ann Loraine ▴ 110
0
votes
0
replies
1.5k
views
segmentation fault in rma.background.correct()
GO Preprocessing AgiMicroRna GO Preprocessing AgiMicroRna
13.2 years ago Axel Klenk ★ 1.1k
0
votes
0
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1.4k
views
HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
13.2 years ago cfischer ▴ 10
0
votes
0
replies
627
views
Variability in microarray data
Microarray GO Network Microarray GO Network
13.2 years ago Guest User ★ 13k
0
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0
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1.2k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
13.2 years ago Guest User ★ 13k
0
votes
2
replies
1.4k
views
Marray Quality Check
Normalization GO Normalization GO
updated 13.2 years ago by ▴ 10 • written 13.2 years ago by ★ 13k
0
votes
2
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2.0k
views
Gene enrichment question
GO GO
updated 13.2 years ago by ▴ 350 • written 13.2 years ago by ▴ 80
0
votes
3
replies
4.8k
views
Openening qPCR file from ABI
GO GO
updated 13.3 years ago by ★ 4.1k • written 13.3 years ago by ★ 13k
0
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2
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1.4k
views
ontoCompare
GO GO
updated 13.3 years ago by ▴ 20 • written 13.3 years ago by ▴ 80
0
votes
0
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1.2k
views
ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
13.3 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
1.6k
views
more question about makeVennDiagram
GO ChIPpeakAnno GO ChIPpeakAnno
13.3 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
843
views
how to do GO analysis if i have some sequences
Annotation GO annotate Annotation GO annotate
13.3 years ago wang peter ★ 2.0k
2
votes
2
replies
1.5k
views
How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
GO Homo sapiens GO Homo sapiens
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ▴ 950
0
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0
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1.1k
views
Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
13.3 years ago Ali Mohammadian ▴ 290
0
votes
3
replies
2.2k
views
ChIPpeakAnno to find peaks nearest to miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
updated 13.3 years ago by ★ 4.3k • written 13.3 years ago by ▴ 350
0
votes
0
replies
1.1k
views
ChIPpeakAnno - Annotation of miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
13.3 years ago Paolo Kunderfranco ▴ 350
0
votes
1
reply
1.7k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 13.3 years ago by ★ 1.2k • written 13.3 years ago by ★ 13k
0
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0
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1.2k
views
GOstats adding custom annotations
Transcription miRNA GO Transcription miRNA GO
13.3 years ago sudeep s ▴ 60
0
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0
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1.5k
views
Gviz : UcscTrack ..
GO hgu133a GO hgu133a
13.3 years ago Tim Smith ★ 1.1k
0
votes
7
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3.1k
views
GOstats: get genes for correspond� ing enriched GO term
GO GOstats GO GOstats
updated 13.3 years ago by ▴ 240 • written 13.3 years ago by ★ 13k
0
votes
0
replies
1.4k
views
question about RamiGO adjM2gml
GO RamiGO GO RamiGO
13.3 years ago Guest User ★ 13k
0
votes
5
replies
3.0k
views
EasyRNASeq issue (missing bai files)
GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq
updated 13.3 years ago by ▴ 10 • written 13.3 years ago by ★ 1.2k
0
votes
1
reply
1.3k
views
[EDGER] Normalization issue
Normalization GO edgeR Normalization GO edgeR
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 20
0
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5
replies
2.1k
views
EBImage Sample code errors
GO EBImage GO EBImage
updated 13.3 years ago by ★ 8.2k • written 13.3 years ago by ▴ 70
0
votes
3
replies
2.9k
views
Coverage of reads per base position from BAM files
Coverage GO Coverage GO
updated 13.3 years ago by 25k • written 13.3 years ago by ★ 13k
0
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3
replies
2.1k
views
GO enrichment significance
GO Clustering Cancer Lung GO Clustering Cancer Lung
13.3 years ago Grimes Mark ▴ 40
0
votes
1
reply
1.1k
views
ontoCompare
GO GO
updated 13.3 years ago by ▴ 10 • written 13.3 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Rsamtools: Read a bam line by line
GO Rsamtools GO Rsamtools
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 650
0
votes
2
replies
2.2k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 13.4 years ago by 68k • written 13.4 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Problems with ggbio
GO GO
updated 13.4 years ago by ★ 11k • written 13.4 years ago by ▴ 420
0
votes
1
reply
1.8k
views
Using readBAM function in segmentSeq
GO Rsamtools GO Rsamtools
updated 13.4 years ago by ▴ 180 • written 13.4 years ago by ▴ 300
0
votes
4
replies
1.9k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 13.4 years ago by ▴ 340 • written 13.4 years ago by ★ 2.0k
0
votes
1
reply
2.2k
views
GEOquery, GSEMatrix parameter and lifecycle of GEO series data
GO Biobase PROcess GEOquery GO Biobase PROcess GEOquery
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 440
0
votes
6
replies
2.8k
views
HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 13.4 years ago by ★ 2.0k • written 13.4 years ago by ▴ 40
0
votes
0
replies
2.2k
views
DEXSeq: problem with dexseq_prepare_annotation.py
GO GO
13.4 years ago Bulak Arpat ▴ 10
0
votes
0
replies
1.3k
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
13.4 years ago Yoo, Seungyeul ▴ 110
0
votes
2
replies
925
views
[ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9
GO Cancer GO Cancer
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by 25k
1,936 results • Page 12 of 39
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Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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