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goProfiles
•
reset
3
votes
9
replies
2.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
9.7 years ago
artur
▴ 80
0
votes
8
replies
1.8k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 15.0 years ago by
Steve Lianoglou
★ 13k • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
906
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
14.9 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
0
replies
1.0k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
14.7 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
788
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
14.0 years ago
wei tie
▴ 30
0
votes
1
reply
1.3k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 13.9 years ago by
James W. MacDonald
66k • written 13.9 years ago by
Xiaohui Wu
▴ 280
0
votes
2
replies
1.5k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 13.9 years ago by
Marc Carlson
★ 7.2k • written 13.9 years ago by
Xiaohui Wu
▴ 280
0
votes
2
replies
1.1k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 11.6 years ago by
Steve Lianoglou
★ 13k • written 11.6 years ago by
Guest User
★ 13k
0
votes
2
replies
1.1k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.3 years ago by
Marc Carlson
★ 7.2k • written 11.3 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
0
replies
1.6k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
10.1 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.7k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
10.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
10.8 years ago
Marc Carlson
★ 7.2k
0
votes
2
replies
1.1k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 16.0 years ago by
Alex Sanchez
▴ 20 • written 16.0 years ago by
Straubhaar, Juerg
▴ 300
0
votes
1
reply
704
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 19 months ago by
Basti
▴ 780 • written 20 months ago by
yeluo
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be avail…
Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
> if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
BioinfGuru
▴ 30
I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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