Showing : gosim • reset
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GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.1 years ago by • 0 • written 12.0 years ago by ★ 13k
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1.4k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
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1.3k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 12.7 years ago by ▴ 40 • written 12.7 years ago by ★ 7.2k
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3
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1.2k
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Query Gene Ontology
GOSim GOSim
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 10
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1
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1.2k
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Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
12.7 years ago Olivier Lucas ▴ 40
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993
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
11.6 years ago Pablo Andretta Jaskowiak ▴ 10
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834
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Problem while working with GOSim package
GOSim GOSim
11.7 years ago ANIRBAN BHAR ▴ 60
3
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3
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827
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.5 years ago by ▴ 730 • written 5.5 years ago by ▴ 10
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686
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
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645
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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 14 months ago by ▴ 730 • written 15 months ago by ▴ 10
11 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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