Showing : gostats • reset
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Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
11.5 years ago Luo Weijun ★ 1.6k
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2.1k
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Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
11.5 years ago Guest User ★ 13k
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2
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1.8k
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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5
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2.2k
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
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3
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3.2k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
12.0 years ago Christine Gläßer ▴ 60
0
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4
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3.8k
views
Identifying Processes as Upregulated or Downregulated
PROcess GOstats PROcess GOstats
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 100
0
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7
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2.7k
views
Gene Ontology Annotations from Gene Names
Microarray GO Organism PROcess GOstats Microarray GO Organism PROcess GOstats
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
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0
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1.3k
views
Ontology
Annotation GO annotate GOstats Annotation GO annotate GOstats
12.1 years ago Marc Carlson ★ 7.2k
0
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1
reply
1.8k
views
Using GOstats with ScanArray Express Data
Organism probe convert GOstats Organism probe convert GOstats
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ★ 13k
0
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1
reply
1.5k
views
GOstats, query between the GO set from geneIdsByCategory and the GO set from org.Ce.egGO
GOstats GOstats
updated 12.1 years ago by ▴ 210 • written 12.1 years ago by ▴ 10
0
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2
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2.3k
views
HGNC annotation for use in GOstats
Annotation GOstats Annotation GOstats
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 200
0
votes
1
reply
2.2k
views
Installing Gostat
GOstats GOstats
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
1
reply
799
views
Error in extracting genes from Goterms using GOStats package
Annotation GO GOstats Annotation GO GOstats
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
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0
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1.6k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
12.7 years ago Chris Whelan ▴ 60
0
votes
6
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1.8k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 430
0
votes
1
reply
1.4k
views
Retrieving all entrez identifiers that are annotated in KEGG pathways
GOstats GOstats
updated 13.0 years ago by ▴ 60 • written 13.0 years ago by 68k
0
votes
1
reply
1.8k
views
Retrieving all entrez identifiers that are annotated in KEGG pathways
GOstats GOstats
updated 13.0 years ago by ▴ 60 • written 13.0 years ago by ★ 13k
0
votes
1
reply
1.5k
views
question about "evidence code" in data.frame from GOstats packages with unsupported model organisms (Marc Carlson)
GO Organism GOstats GO Organism GOstats
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ▴ 100
0
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0
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2.4k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
13.1 years ago Malcolm Cook ★ 1.6k
0
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12
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3.2k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 13.1 years ago by ★ 1.6k • written 13.1 years ago by ▴ 20
0
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3
replies
1.5k
views
GOstats different goDag size just changing the
Annotation GO GOstats Annotation GO GOstats
updated 13.4 years ago by 68k • written 13.4 years ago by ▴ 370
0
votes
2
replies
1.3k
views
Cannot construct AnnotationDb for GOStats
GO affy GOstats biomaRt GO affy GOstats biomaRt
13.5 years ago wrighth ▴ 260
0
votes
7
replies
3.2k
views
GOstats: get genes for correspond� ing enriched GO term
GO GOstats GO GOstats
updated 13.6 years ago by ▴ 240 • written 13.6 years ago by ★ 13k
0
votes
1
reply
1.1k
views
FW: Gene list annotation
Annotation GO annotate limma GOstats topGO Annotation GO annotate limma GOstats topGO
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 10
0
votes
3
replies
1.8k
views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 120
0
votes
1
reply
1.7k
views
GO Analysis for Mouse Exon Array
Annotation Pathways GO limma GOstats oligo Annotation Pathways GO limma GOstats oligo
updated 14.0 years ago by ★ 4.3k • written 14.0 years ago by ▴ 60
0
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0
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842
views
create GeneSetCollection from OBOCollection
GO convert GOstats GO convert GOstats
14.1 years ago Marc Carlson ★ 7.2k
0
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0
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925
views
create GeneSetCollection from OBOCollection
GO convert GOstats GO convert GOstats
14.1 years ago Wendy Qiao ▴ 360
0
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1
reply
2.2k
views
PFAM gene enrichment test using GOstats and Category
SNP Annotation GO Organism affy GOstats Category SNP Annotation GO Organism affy
updated 14.1 years ago by ▴ 350 • written 14.2 years ago by ▴ 10
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0
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1.8k
views
limma - 2-color agilent microarray, GO annotation
Microarray Annotation GO Organism limma GOstats oligo ASSIGN Microarray Annotation GO
14.2 years ago Gordon Smyth 53k
0
votes
1
reply
2.7k
views
PFAM gene enrichment test using GOstats and Category
Annotation GO Organism GOstats Category Annotation GO Organism GOstats Category
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ▴ 10
0
votes
9
replies
2.5k
views
problem with GO terms
GO GOstats Category GO GOstats Category
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 620
0
votes
4
replies
1.5k
views
GOstats with Reactome database?
GOstats GOstats
updated 14.5 years ago by 25k • written 14.5 years ago by ★ 1.9k
0
votes
1
reply
1.1k
views
Are bioconductor packages designed for enrichment analysis affected by KEGG privatization ?
Pathways GOstats Pathways GOstats
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 240
0
votes
1
reply
1.2k
views
GOstats : KEGGHyperGParams error
GOstats GOstats
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 240
0
votes
1
reply
1.4k
views
Bioconductor Digest, Vol 98, Issue 6
Microarray Annotation GO probe GOstats Microarray Annotation GO probe GOstats
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 10
0
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5
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2.7k
views
GOstats problem with output
Annotation GO GOstats Annotation GO GOstats
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ★ 1.5k
0
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0
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1.6k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.9 years ago David ▴ 860
0
votes
8
replies
2.8k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 14.9 years ago by ▴ 930 • written 14.9 years ago by ▴ 860
0
votes
1
reply
1.5k
views
goseq: gene universe
GOstats goseq GOstats goseq
updated 14.9 years ago by ★ 2.0k • written 14.9 years ago by ★ 6.0k
0
votes
8
replies
3.0k
views
foreach, doMC, and GOstats problems
GO GOstats GO GOstats
updated 14.9 years ago by ★ 8.2k • written 14.9 years ago by ▴ 570
0
votes
0
replies
2.2k
views
GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
15.0 years ago Duke ▴ 210
0
votes
5
replies
3.1k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 210
0
votes
1
reply
1.1k
views
Change in URL for PFAM links in GOstats (PFAMHyperGResult)
GOstats GOstats
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 350
0
votes
1
reply
1.1k
views
Help for GOstats packages
Annotation GOstats Annotation GOstats
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 970
0
votes
1
reply
2.0k
views
extracting topGO gene ids from result object
Annotation GO graph GOstats topGO Annotation GO graph GOstats topGO
updated 15.1 years ago by ▴ 20 • written 15.2 years ago by ▴ 400
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO Cancer BSgenome graph Biostrings GOstats BSgenome rtracklayer GO Cancer BSgenome
updated 15.2 years ago by ★ 11k • written 15.2 years ago by ▴ 200
0
votes
4
replies
1.5k
views
Incomplete EntrezID annotations for the Mouse 430 v2.0 probe-set
Annotation GO affy GOstats Annotation GO affy GOstats
updated 15.3 years ago by 6.7k • written 15.3 years ago by ▴ 110
0
votes
4
replies
1.5k
views
GOstats::geneIdUniverse() and its relation to organism annotation db's
Annotation GO Cancer GOstats Annotation GO Cancer GOstats
updated 15.5 years ago by ▴ 280 • written 15.5 years ago by ★ 13k
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votes
0
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2.2k
views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription PROcess GOstats cycle Transcription PROcess GOstats cycle
15.6 years ago zhidong yuan ▴ 10
250 results • Page 2 of 5
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Answer: bcftools norm Equivalent by a2a2hd42aa • 0
it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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