Bioconductor Gsea

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6.4k

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GSEA GeneSetEnrichment DifferentialExpression

updated 11 weeks ago by ATpoint ★ 4.0k • written 2.1 years ago by nhaus ▴ 30

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1.3k

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enrichplot GSEA clusterProfiler

updated 6 months ago by Fatemeh • 0 • written 8 months ago by Cen • 0

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964

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GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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605

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GSEA fgsea

9 months ago Cen • 0

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574

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gsea DESeq2

updated 6 months ago by ATpoint ★ 4.0k • written 6 months ago by Grace.Ciabattoni • 0

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334

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fgsea gsea

5 weeks ago • updated 25 days ago Gordon • 0

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216

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msigdb gmt GSEA

written 5 weeks ago by Georg • 0

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196

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clusterProfiler annotation gseGO gsea OrgDb

updated 4 weeks ago by Guido Hooiveld ★ 3.9k • written 5 weeks ago by enee ▴ 10

8 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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