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hitc
•
reset
0
votes
3
replies
910
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
23 months ago
shikha
• 0
1
vote
3
replies
1.3k
views
A/B compartments computation: control settings
HiTC
updated 2.8 years ago by
ahmed.abbaselmahdi
• 0 • written 4.9 years ago by
Konstantin Okonechnikov
▴ 40
0
votes
6
replies
921
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.2 years ago
sergio.espeso-gil
• 0
1
vote
5
replies
1.5k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.8 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
Gene Density computation in pca.hic
HiTC
5.9 years ago
cath
▴ 30
0
votes
5
replies
1.6k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.2 years ago by
Nicolas Servant
▴ 260 • written 6.2 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.4k
views
normLGF yields non-symetric matrices
HiTC
updated 7.1 years ago by
Nicolas Servant
▴ 260 • written 7.1 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.2k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.6 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.6 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
2.5k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.7 years ago
Bogdan
▴ 670
0
votes
0
replies
874
views
normalization method for 5C
HiTC
8.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
Problem importing 5C data
importing
HiTC
9.1 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.2 years ago by
Dan Tenenbaum
★ 8.2k • written 11.2 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.3k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 11.3 years ago by
Valerie Obenchain
★ 6.8k • written 11.3 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.2k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 11.3 years ago by
Martin Morgan
25k • written 11.3 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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