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htqpcr
•
reset
3
votes
4
replies
3.0k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 2.5 years ago by
Ming
▴ 380 • written 3.3 years ago by
enricoferrero
▴ 660
0
votes
4
replies
2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
V. Oostra
▴ 30
0
votes
6
replies
2.2k
views
HTqPCR
qPCR
GO
GLAD
HTqPCR
qPCR
GO
GLAD
HTqPCR
updated 11.9 years ago by
Heidi Dvinge
★ 2.0k • written 11.9 years ago by
Heidi Dvinge
▴ 40
0
votes
7
replies
2.1k
views
readCtData() in HTqPCR with matrix of multiple samples
HTqPCR
HTqPCR
updated 13.1 years ago by
Heidi Dvinge
★ 2.0k • written 13.1 years ago by
Andrew Yee
▴ 350
3
votes
7
replies
2.1k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
7.3 years ago
henrik.seidel
▴ 40
0
votes
0
replies
2.1k
views
reading qRT-PCR data
ddCt
HTqPCR
ReadqPCR
ddCt
HTqPCR
ReadqPCR
10.0 years ago
Guest User
★ 13k
0
votes
2
replies
2.0k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
HTqPCR
updated 14.3 years ago by
Heidi Dvinge
★ 2.0k • written 14.3 years ago by
Adam Kiezun
▴ 50
0
votes
2
replies
2.0k
views
HTqPCR problem with creation of qPCRset
qPCR
HTqPCR
qPCR
HTqPCR
updated 11.2 years ago by
James W. MacDonald
65k • written 11.2 years ago by
Elisabeth Gilis
▴ 20
1
vote
0
replies
2.0k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR
readCtData
Heidi Dvinge
8.0 years ago
virginia.claudio
▴ 10
0
votes
2
replies
1.9k
views
reading in data in ReadqPCR
qPCR
Annotation
HTqPCR
qPCR
Annotation
HTqPCR
11.2 years ago
Guest User
★ 13k
0
votes
1
reply
1.8k
views
Problems creating a qPCRset object in "HTqPCR"
HTqPCR
HTqPCR
12.9 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
1.8k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR) (Alexander Williams)
qPCR
HTqPCR
qPCR
HTqPCR
13.3 years ago
Alexander Williams
▴ 20
0
votes
1
reply
1.8k
views
Problem with function limmaCtData in HTqPCR package: "leading minor of order 2 is not positive definite"
HTqPCR
HTqPCR
updated 13.8 years ago by
Heidi Dvinge
★ 2.0k • written 13.8 years ago by
Bass, Kevin
▴ 10
1
vote
7
replies
1.7k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma
ndups
htqpcr
software error
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
julio.c.silver
• 0
0
votes
5
replies
1.7k
views
HTqPCR: new qPCRset objects problem
HTqPCR
HTqPCR
updated 13.2 years ago by
Heidi Dvinge
★ 2.0k • written 13.2 years ago by
Wenbo Mu
▴ 30
0
votes
1
reply
1.6k
views
Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering
HTqPCR
Clustering
HTqPCR
updated 11.5 years ago by
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60 • written 11.5 years ago by
Jens Durruthy-Durruthy
▴ 10
0
votes
0
replies
1.6k
views
FW: Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering
HTqPCR
Clustering
HTqPCR
11.5 years ago
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60
0
votes
0
replies
1.6k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
11.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.6k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
11.2 years ago
b1gorsuch@comcast.net
▴ 20
0
votes
8
replies
1.5k
views
HTqPCR problems
HTqPCR
HTqPCR
updated 11.9 years ago by
Heidi Dvinge
★ 2.0k • written 11.9 years ago by
Simon Melov
▴ 340
0
votes
5
replies
1.5k
views
Reading in mutiple files using readCtData
HTqPCR
HTqPCR
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Norm Allaire
▴ 50
0
votes
0
replies
1.5k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr
dataimport
9.0 years ago
H.H.
• 0
0
votes
0
replies
1.5k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR)
qPCR
HTqPCR
qPCR
HTqPCR
13.3 years ago
Alexander Williams
▴ 20
0
votes
2
replies
1.5k
views
Compatibility of Biorad cfx files to HTqPCR?
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.1 years ago by
Heidi Dvinge
★ 2.0k • written 13.1 years ago by
TP Sahoo
▴ 10
0
votes
2
replies
1.5k
views
HTqPCR : readCtData problem?
miRNA
qPCR
HTqPCR
miRNA
qPCR
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
4
replies
1.5k
views
Reading in data with HTqPCR
qPCR
Cancer
cycle
HTqPCR
qPCR
Cancer
cycle
HTqPCR
13.9 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.5k
views
HTqPCR question
HTqPCR
HTqPCR
updated 13.4 years ago by
Heidi Dvinge
★ 2.0k • written 13.4 years ago by
Simon Melov
▴ 340
0
votes
1
reply
1.4k
views
TLDA data
Clustering
Cancer
PROcess
cycle
HTqPCR
Clustering
Cancer
PROcess
cycle
HTqPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
deepak roshan
▴ 40
0
votes
4
replies
1.4k
views
HTqPCR problems
qPCR
GO
Preprocessing
GLAD
HTqPCR
qPCR
GO
Preprocessing
GLAD
HTqPCR
updated 11.8 years ago by
Simon Melov
▴ 340 • written 11.8 years ago by
Heidi Dvinge
★ 2.0k
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.3 years ago by
henrik.seidel
▴ 40 • written 7.5 years ago by
julius
▴ 20
0
votes
4
replies
1.4k
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 10.5 years ago by
Levi Waldron
★ 1.1k • written 10.5 years ago by
alessandro.guffanti@genomnia.com
▴ 330
0
votes
1
reply
1.4k
views
HTqPCR problem with replicates
ddCt
HTqPCR
ddCt
HTqPCR
updated 12.3 years ago by
Heidi Dvinge
★ 2.0k • written 12.3 years ago by
marco fabbri
▴ 320
0
votes
1
reply
1.4k
views
Possible bug in setCategory function from HTqPCR package
htqpcr
HTqPCR
updated 7.6 years ago by
h.roest
• 0 • written 9.4 years ago by
Matthew McCall
▴ 830
0
votes
1
reply
1.4k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
a4
HTqPCR
a4
updated 14.2 years ago by
Heidi Dvinge
★ 2.0k • written 14.2 years ago by
marco fabbri
▴ 320
1
vote
1
reply
1.3k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.3 years ago by
Gordon Smyth
50k • written 8.4 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
1.3k
views
structure of cfx file for HTqPCR
Microarray
qPCR
cycle
HTqPCR
Microarray
qPCR
cycle
HTqPCR
11.2 years ago
Guest User
★ 13k
0
votes
5
replies
1.3k
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 10.6 years ago by
James W. MacDonald
65k • written 10.6 years ago by
Guest User
★ 13k
0
votes
2
replies
1.3k
views
HTqPCR
HTqPCR
HTqPCR
updated 12.0 years ago by
Heidi Dvinge
★ 2.0k • written 12.0 years ago by
wenhuo hu
▴ 200
2
votes
1
reply
1.3k
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
10.2 years ago
Cornwell, Adam
▴ 110
1
vote
2
replies
1.3k
views
No differential expression with limmaCtData possible
limma
htqpcr
6.5 years ago
h.roest
• 0
0
votes
3
replies
1.3k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 7.2 years ago by
hdvinge
• 0 • written 7.3 years ago by
henrik.seidel
▴ 40
0
votes
1
reply
1.2k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR
htqpcr
subsetting
updated 7.3 years ago by
henrik.seidel
▴ 40 • written 7.5 years ago by
Guido Hooiveld
★ 3.9k
0
votes
0
replies
1.2k
views
doubt in HTqPCR
Cancer
ddCt
cycle
HTqPCR
ASSIGN
Cancer
ddCt
cycle
HTqPCR
ASSIGN
12.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.2k
views
HTqPCR + setting flags as unreliable problem
htqpcr
flags
setCategory
9.4 years ago
samantha.smith-4
• 0
0
votes
2
replies
1.2k
views
HTqPCR - limmaCtData using samples with different number of replicates?
HTqPCR
HTqPCR
updated 11.9 years ago by
Heidi Dvinge
★ 2.0k • written 11.9 years ago by
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60
0
votes
0
replies
1.2k
views
HTqPCR: qPCRset
Annotation
HTqPCR
Annotation
HTqPCR
11.2 years ago
Guest User
★ 13k
0
votes
4
replies
1.2k
views
HTqPCR questions
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.3 years ago by
alessandro.guffanti@genomnia.com
▴ 330 • written 13.3 years ago by
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA
microRNA
HTqPCR
miRNA
microRNA
HTqPCR
updated 12.7 years ago by
Heidi Dvinge
★ 2.0k • written 12.7 years ago by
Guido Hooiveld
★ 3.9k
0
votes
3
replies
1.2k
views
HTqPCR plotting groups of interest
HTqPCR
HTqPCR
updated 11.8 years ago by
Heidi Dvinge
★ 2.0k • written 11.8 years ago by
Simon Melov
▴ 340
0
votes
1
reply
1.2k
views
featureNames converted to numbers in limmaCtData
limma
htqpcr
8.7 years ago
julio.c.silver
• 0
50 results • Page
1 of 1
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Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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