Bioconductor Htseqcounts

Showing : htseqcounts • reset

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1.8k

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deseq2 deseq edgeR rnaseq htseqcounts

8.0 years ago Deepali • 0

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2.5k

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edger htseqcounts

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by Bioinformatics ▴ 30

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2.9k

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R summarizeoverlaps htseqcounts

updated 8.2 years ago by thokall ▴ 160 • written 8.2 years ago by Walter F. Baumann ▴ 10

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5.3k

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htseqcounts edger

updated 3.3 years ago by Randy • 0 • written 8.4 years ago by mictadlo ▴ 10

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4.0k

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edger htseqcounts

updated 8.4 years ago by Gordon Smyth 53k • written 8.4 years ago by mictadlo ▴ 10

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1.6k

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htseqcounts star rnaseq

8.4 years ago Ahdee ▴ 60

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3.0k

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featurecounts SAM htseqcounts

updated 2.6 years ago by Yang Liao ▴ 450 • written 8.7 years ago by courtney.stairs • 0

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4.3k

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chipseq deseq2 htseqcounts

updated 2.9 years ago by mhashan.j ▴ 10 • written 8.9 years ago by JunLVI ▴ 40

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1.5k

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edger htseqcounts rnaseq

updated 9.1 years ago by Aaron Lun ★ 29k • written 9.1 years ago by romsdahl • 0

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1.4k

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dexseq_count dexseq htseqcounts

9.4 years ago as1023 • 0

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2.3k

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deseq2 pca tximportdata htseqcounts

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 9.7 years ago by Gordon Smyth 53k • written 9.7 years ago by Ben Mansfeld • 0

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2.6k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Comment: limpa analysis advice by Gordon Smyth 53k

I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…

Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k

As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k

Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…

Votes

Comment: limpa analysis advice

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

Answer: Array weights in dpcDE

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