Bioconductor Htseqcounts

Showing : htseqcounts • reset

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1.8k

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deseq2 deseq edgeR rnaseq htseqcounts

7.9 years ago Deepali • 0

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2.5k

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edger htseqcounts

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by Bioinformatics ▴ 30

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2.8k

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R summarizeoverlaps htseqcounts

updated 8.2 years ago by thokall ▴ 160 • written 8.2 years ago by Walter F. Baumann ▴ 10

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5.2k

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htseqcounts edger

updated 3.2 years ago by Randy • 0 • written 8.3 years ago by mictadlo ▴ 10

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3.9k

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edger htseqcounts

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by mictadlo ▴ 10

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1.6k

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htseqcounts star rnaseq

8.3 years ago Ahdee ▴ 60

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3.0k

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featurecounts SAM htseqcounts

updated 2.5 years ago by Yang Liao ▴ 450 • written 8.6 years ago by courtney.stairs • 0

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4.2k

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chipseq deseq2 htseqcounts

updated 2.8 years ago by mhashan.j ▴ 10 • written 8.9 years ago by JunLVI ▴ 40

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1.4k

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edger htseqcounts rnaseq

updated 9.0 years ago by Aaron Lun ★ 29k • written 9.0 years ago by romsdahl • 0

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1.4k

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dexseq_count dexseq htseqcounts

9.3 years ago as1023 • 0

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2.3k

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deseq2 pca tximportdata htseqcounts

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by jarod_v6@libero.it ▴ 40

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2.3k

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deseq2 goseq htseqcounts rnaseq plant

updated 9.6 years ago by Gordon Smyth 53k • written 9.6 years ago by Ben Mansfeld • 0

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2.5k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by sakura.nussbaum ▴ 10

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Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k

I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…

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Error in SummarizedExperiment(assays = SimpleList(counts = countData)

Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o

Limma-voom sample weights and impact on DEG numbers

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

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