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insilicomerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.0 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.1k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
Adam_M
• 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.2 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.6k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
1.8k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
8.7 years ago
svlachavas
▴ 830
1
vote
2
replies
2.3k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
8.8 years ago
alakatos
▴ 130
6
votes
4
replies
4.0k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
svlachavas
▴ 830
0
votes
0
replies
944
views
problem with insilicoMerging
insilicomerging
8.9 years ago
carol white
▴ 680
1
vote
5
replies
1.9k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.0 years ago by
Matthew McCall
▴ 830 • written 9.0 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.1k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
9.4 years ago
Li Liu
▴ 100
0
votes
1
reply
1.3k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.0 years ago by
Quentin De Clerck
▴ 10 • written 10.0 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.4k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 10.7 years ago by
Dan Tenenbaum
★ 8.2k • written 10.7 years ago by
Li Liu
▴ 100
0
votes
2
replies
1.5k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
10.9 years ago
Ed Siefker
▴ 230
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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