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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.9 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.3k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
Adam_M
• 0
0
votes
1
reply
1.6k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
8.1 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.8k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.1k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
9.5 years ago
svlachavas
▴ 840
1
vote
2
replies
2.6k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
9.6 years ago
alakatos
▴ 130
6
votes
4
replies
4.3k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 9.6 years ago by
Aaron Lun
★ 28k • written 9.6 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.1k
views
problem with insilicoMerging
insilicomerging
9.7 years ago
carol white
▴ 680
1
vote
5
replies
2.3k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.8 years ago by
Matthew McCall
▴ 830 • written 9.8 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.3k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
10.3 years ago
Li Liu
▴ 100
0
votes
1
reply
1.5k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.8 years ago by
Quentin De Clerck
▴ 10 • written 10.8 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.6k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 11.5 years ago by
Dan Tenenbaum
★ 8.2k • written 11.5 years ago by
Li Liu
▴ 100
0
votes
2
replies
2.0k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
11.7 years ago
Ed Siefker
▴ 230
13 results • Page
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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