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deseq2 design interaction term R

written 7.2 years ago by briverog • 0

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deseq2 multifactor interaction term gender effect 3-factors

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by kmu004 ▴ 50

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deseq2 interaction term

6.6 years ago guipagui • 0

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deseq2 interaction term

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by Cece • 0

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deseq2 extracting contrasts rnaseq interaction term

updated 6.8 years ago by swbarnes2 ★ 1.4k • written 6.8 years ago by Amit Indap ▴ 10

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deseq2 lfcshrink interaction term

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by krutherford • 0

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deseq2 interaction term multiple groups betaprior

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by tarun2 • 0

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deseq2 multiple factor design interaction term

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by Giovanni Bacci • 0

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deseq2 ANOVA design interaction term

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by tarun2 • 0

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deseq2 sva interaction term grouping variable deseq

7.3 years ago kevin.kingsland ▴ 70

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deseq2 interaction term

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by sofiagreen72211 ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by zahra.aboukhalil • 0

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deseq2 deseq limma interaction term

updated 8.0 years ago by Simon Anders ★ 3.8k • written 8.0 years ago by sbcn ▴ 80

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

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A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

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Great Question to inzirio ▴ 10