Bioconductor Interactionset

Showing : interactionset • reset

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DEGcomparison DESeq2 InteractionSet pvalue

12 weeks ago • updated 11 weeks ago paria.alipour • 0

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671

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InteractionSet GInteractions

4 months ago Sarah ▴ 10

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440

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InteractionSet subsetByOverlaps GenomicInteractions

10 months ago LaureTomas ▴ 10

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795

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InteractionSet BuildReport

15 months ago martin.grigorov ▴ 10

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1.0k

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InteractionSet

2.8 years ago noag • 0

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860

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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845

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.1 years ago by girardot • 0

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.3k

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interactionset granges

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.3k

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diffhic interactionset

7.8 years ago Vivek.b ▴ 100

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1.1k

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InteractionSet structural variants

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by tangming2005 ▴ 190

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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