Bioconductor Interactionset

Showing : interactionset • reset

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1.3k

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diffhic interactionset

7.8 years ago Vivek.b ▴ 100

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1.3k

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interactionset granges

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.1k

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DEGcomparison DESeq2 InteractionSet pvalue

10 weeks ago • updated 9 weeks ago paria.alipour • 0

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1.0k

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InteractionSet structural variants

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by tangming2005 ▴ 190

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1.0k

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InteractionSet

2.8 years ago noag • 0

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845

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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838

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

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779

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InteractionSet BuildReport

15 months ago martin.grigorov ▴ 10

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659

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InteractionSet GInteractions

3 months ago Sarah ▴ 10

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423

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InteractionSet subsetByOverlaps GenomicInteractions

10 months ago LaureTomas ▴ 10

12 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Intent to delete when going home. Sorry for that!

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice!

Votes

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

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Scholar to ATpoint ★ 4.1k