Showing : interactionset • reset
2
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1
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1.8k
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Error to rename seqlevels in Granges interactions
interactionset granges
updated 7.5 years ago by ★ 29k • written 7.5 years ago by ▴ 40
2
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1
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1.5k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet structural variants
updated 9.5 years ago by ★ 29k • written 9.5 years ago by ▴ 200
2
votes
1
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1.8k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 8.2 years ago by ★ 29k • written 8.2 years ago by ▴ 20
1
vote
1
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2.2k
views
DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in a Four-Factor Design
DESeq2 multifactorialdesign interaction InteractionSet
updated 6 months ago by 43k • written 6 months ago by • 0
1
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5
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2.0k
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diffHiC differential HiC analysis starting from Ginteractions object
diffhic interactionset
9.5 years ago Vivek.b ▴ 100
1
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12
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2.9k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison DESeq2 InteractionSet pvalue
23 months ago • updated 22 months ago paria.alipour • 0
1
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0
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940
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
2.5 years ago Laureano Tomás-Daza ▴ 10
0
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2
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1.8k
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Converting a GInteractions object to a dataframe
InteractionSet
4.5 years ago noag • 0
0
votes
3
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1.5k
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Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet GInteractions
2.0 years ago • updated 24 months ago Sarah ▴ 10
0
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2
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1.8k
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Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 7.1 years ago by ▴ 140 • written 7.1 years ago by • 0
0
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3
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1.4k
views
trying to generate an object from a virtual class ("DataFrame")
InteractionSet BuildReport
3.0 years ago martin.grigorov ▴ 10
0
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1
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1.4k
views
How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 5.7 years ago by ★ 29k • written 5.7 years ago by • 0
0
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1
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1.6k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 5.6 years ago by ★ 29k • written 5.6 years ago by • 0
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Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
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This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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