Bioconductor Junctionseq

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1.7k

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DEXSeq JunctionSeq RNAseq QoRTs

4.7 years ago • updated 4.6 years ago n.tear ▴ 20

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1.2k

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junctionseq splicing RNAseq DEXSeq

written 5.9 years ago by stuart ▴ 10

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JunctionSeq

8.5 years ago rachelrodgers12 • 0

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junctionseq relevel reference

8.7 years ago Assa Yeroslaviz ★ 1.5k

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1.2k

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junctionseq qorts multiple factor design relevel

8.7 years ago Assa Yeroslaviz ★ 1.5k

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1.8k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 8.9 years ago by Steve Lianoglou ★ 13k • written 8.9 years ago by l.frank • 0

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1.1k

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junctionseq

8.9 years ago jbono ▴ 10

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junctionseq design and contrast matrix

9.0 years ago stuart • 0

8 results • Page 1 of 1

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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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