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karyoploteR
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Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
18 months ago
Shreyash
▴ 10
9
votes
5
replies
1.8k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 2.1 years ago by
James W. MacDonald
67k • written 2.1 years ago by
rtt100
• 0
0
votes
1
reply
986
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
mpigozzi
• 0
4
votes
5
replies
3.4k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 5.2 years ago by
bernatgel
▴ 150 • written 5.2 years ago by
Aditya
▴ 160
0
votes
1
reply
1.1k
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 5.5 years ago by
bernatgel
▴ 150 • written 5.5 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
2.1k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 7.0 years ago by
bernatgel
▴ 150 • written 7.0 years ago by
kirannbishwa01
▴ 20
1
vote
2
replies
1.4k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 7.1 years ago by
bgel
▴ 10 • written 7.1 years ago by
spr
▴ 10
0
votes
0
replies
1.0k
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
7.3 years ago
Radek
▴ 90
8 results • Page
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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
by
Gordon Smyth
51k
`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.
Comment: DESeq Input from Salmon + tximport/tximeta
by
LuciaNhu
• 0
Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
Answer: DESeq Input from Salmon + tximport/tximeta
by
Michael Love
42k
Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…
Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…
Votes
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
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