Bioconductor KaryoploteR

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

10 months ago remi-xavier.coux ▴ 10

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882

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

2.5 years ago Shreyash ▴ 10

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2.3k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by rtt100 • 0

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1.2k

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KaryoploteR

updated 5.1 years ago by Kevin Blighe ★ 4.0k • written 5.1 years ago by mpigozzi • 0

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4.1k

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karyoploter

updated 6.1 years ago by bernatgel ▴ 150 • written 6.1 years ago by Aditya ▴ 160

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1.5k

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karyoploteR

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by saeed Ur Rehman • 0

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2.4k

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software error R bsgenome karyoploter

updated 8.0 years ago by bernatgel ▴ 150 • written 8.0 years ago by kirannbishwa01 ▴ 20

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1.7k

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karyoploter

updated 8.1 years ago by bgel ▴ 10 • written 8.1 years ago by spr ▴ 10

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1.2k

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KaryoploteR

8.3 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

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