Bioconductor KaryoploteR

Showing : karyoploteR • reset

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392

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

3 months ago remi-xavier.coux ▴ 10

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738

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

23 months ago • updated 22 months ago Shreyash ▴ 10

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2.0k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.4 years ago by James W. MacDonald 68k • written 2.5 years ago by rtt100 • 0

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1.1k

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KaryoploteR

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by mpigozzi • 0

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3.7k

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karyoploter

updated 5.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by Aditya ▴ 160

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1.3k

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karyoploteR

updated 5.9 years ago by bernatgel ▴ 150 • written 5.9 years ago by saeed Ur Rehman • 0

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2.2k

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software error R bsgenome karyoploter

updated 7.4 years ago by bernatgel ▴ 150 • written 7.4 years ago by kirannbishwa01 ▴ 20

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1.5k

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karyoploter

updated 7.5 years ago by bgel ▴ 10 • written 7.5 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.7 years ago Radek ▴ 90

9 results • Page 1 of 1

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Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k

What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…

Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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