Bioconductor KaryoploteR

Showing : karyoploteR • reset

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650

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

12 months ago remi-xavier.coux ▴ 10

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902

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

2.6 years ago Shreyash ▴ 10

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2.4k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 3.2 years ago by James W. MacDonald 68k • written 3.2 years ago by rtt100 • 0

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1.2k

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KaryoploteR

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.3 years ago by mpigozzi • 0

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4.2k

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karyoploter

updated 6.3 years ago by bernatgel ▴ 150 • written 6.3 years ago by Aditya ▴ 160

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1.6k

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karyoploteR

updated 6.6 years ago by bernatgel ▴ 150 • written 6.6 years ago by saeed Ur Rehman • 0

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2.4k

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software error R bsgenome karyoploter

updated 8.1 years ago by bernatgel ▴ 150 • written 8.1 years ago by kirannbishwa01 ▴ 20

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1.7k

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karyoploter

updated 8.2 years ago by bgel ▴ 10 • written 8.2 years ago by spr ▴ 10

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1.3k

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KaryoploteR

8.4 years ago Radek ▴ 90

9 results • Page 1 of 1

Recent ...

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130