Bioconductor Kegg

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111

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 12 days ago by James W. MacDonald 65k • written 12 days ago by fernanda.backsouza ▴ 10

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400

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clusterProfiler GenomicDistributionsData KEGG

14 days ago • updated 11 days ago fernanda.backsouza ▴ 10

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216

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 14 days ago by Guido Hooiveld ★ 3.9k • written 16 days ago by fernanda.backsouza ▴ 10

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193

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Pathways clusterProfiler gseKEGG KEGG

23 days ago julia_mcdonough • 0

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264

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enrichKEGG KEGGgraph KEGG

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 11 weeks ago by cinzia.spagnoli • 0

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355

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KEGGREST KEGG RNASeq

6 months ago mch • 0

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1.2k

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pathview kegg KEGG

updated 7 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

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1.1k

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

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354

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axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

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1.1k

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pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

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565

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timecourse KEGG DESeq2

updated 11 months ago by Michael Love 41k • written 11 months ago by Fred • 0

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1.3k

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cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

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1.2k

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KEGG limma

written 13 months ago by andrewsm • 0

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2.5k

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KEGG gometh

updated 11 months ago by Aung • 0 • written 14 months ago by pedro-marra ▴ 10

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2.0k

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KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 14 months ago by ruiqi.li ▴ 10

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1.9k

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clusterProfiler enrichment KEGG

updated 11 weeks ago by cinzia.spagnoli • 0 • written 23 months ago by AP • 0

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1.4k

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KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

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1.5k

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kegg enrichkegg clusterprofiler

updated 5 months ago by EvaLan • 0 • written 5.8 years ago by bekah ▴ 40

18 results • Page 1 of 1

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k