Bioconductor MRNA

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lncRNA probeID mRNA genesymbol

3.0 years ago Sooni ▴ 10

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1.3k

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mircomb mrna mirna degs interaction

5.6 years ago andreia ▴ 10

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microarray lncrna microrna mrna raw data

updated 8.2 years ago by Axel Klenk ★ 1.1k • written 8.2 years ago by ntagaras • 0

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R bioconductor RNA mRNA RNA binding proteins

8.9 years ago Walter F. Baumann ▴ 10

4 results • Page 1 of 1

Recent ...

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Comment: NUPOP usage by Tikaaaq2c • 0

To use the NuPoP application for nucleosome positioning prediction, you first need to provide a DNA sequence in FASTA format. If you are us…

Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0

Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0

Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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