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mRNA
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how to convert lncRNA probe name or mRNA probe name to gene symbol
lncRNA
probeID
mRNA
genesymbol
23 months ago
Sooni
▴ 10
0
votes
1
reply
1.0k
views
mircomb analysis from deg's list
mircomb
mrna
mirna
degs
interaction
4.6 years ago
andreia
▴ 10
0
votes
2
replies
1.6k
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R packages for differential expression analysis of raw data from arraystar microarrays
microarray
lncrna
microrna
mrna
raw data
updated 7.2 years ago by
Axel Klenk
★ 1.0k • written 7.2 years ago by
ntagaras
• 0
0
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0
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1.7k
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Finding candidate binding sites for RNA binding proteins in R
R
bioconductor
RNA
mRNA
RNA binding proteins
7.9 years ago
Walter F. Baumann
▴ 10
4 results • Page
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Answer: Selection of correct coefficients or contrasts in DESeq2
by
swbarnes2
★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry
by
Luca
• 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
Quang NN
▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot
by
ATpoint
★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
ATpoint
★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
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