Bioconductor Maplot

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2.7k

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deseq2 maplot

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by jshouse ▴ 10

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2.5k

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diffbind R MAplot Chipseq

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by melnuesch ▴ 10

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2.2k

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DESeq2 MAplot deseq

updated 3.2 years ago by Michael Love 41k • written 3.2 years ago by sp • 0

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2.1k

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MAplot

15 months ago Nathalie ▴ 20

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2.0k

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deseq2 maplot subset

updated 6.3 years ago by Michael Love 41k • written 6.3 years ago by rbronste ▴ 60

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1.8k

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edgeR MAplot rnaseq differential gene expression

updated 7.7 years ago by Gordon Smyth 50k • written 7.7 years ago by joseph.bergenstrahle • 0

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1.6k

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diffbind maplot

updated 6.3 years ago by Rory Stark ★ 5.2k • written 6.3 years ago by grundelphine • 0

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1.5k

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MAPLOT DESEQ2 RNASEQ

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by phurbusang • 0

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1.4k

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deseq2 MAplot

5.4 years ago avitalwasser • 0

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1.2k

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deseq2 maplot

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by rbronste ▴ 60

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1.2k

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diffbind deseq2 maplot

updated 6.6 years ago by Rory Stark ★ 5.2k • written 6.6 years ago by rbronste ▴ 60

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1.2k

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MAplot rnaseq cummerbund

8.1 years ago kritikamish99 ▴ 10

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1.1k

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deseq2 normalization maplot rnaseq

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by ma619 • 0

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974

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DESeq2 MAplot

updated 14 months ago by ATpoint ★ 4.1k • written 14 months ago by Michael • 0

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775

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deseq2 MAplot lfcshrink

updated 3.7 years ago by Michael Love 41k • written 3.7 years ago by evelas13 • 0

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590

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deseq2 maplot annotation

updated 4.5 years ago by Michael Love 41k • written 4.5 years ago by rbronste ▴ 60

16 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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