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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 5.0 years ago by ★ 2.1k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
5.8 years ago shepherl 4.2k
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Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
5.9 years ago wang.lingjue • 0
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Scans vs Spectra
mass spectrometry mzr/ msnbase
7.4 years ago Ed Siefker ▴ 230
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Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 7.4 years ago by 1.6k • written 7.4 years ago by ▴ 10
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R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mass spectrometry R mzR
7.5 years ago andreas.breidbach • 0
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MAIT or Specmine
metabolomics mait specmine mass spectrometry
8.0 years ago bhgyu ▴ 30
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
8.4 years ago • updated 8.3 years ago Laurent Gatto 1.6k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
8.7 years ago Laurent Gatto 1.6k
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
9.7 years ago Olga Vitek ▴ 40
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
9.8 years ago Titan • 0
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Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 10
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
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Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
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